RetrogeneDB ID: | retro_pabe_1673 | ||
Retrocopylocation | Organism: | Orangutan (Pongo abelii) | |
Coordinates: | 19:34741021..34741791(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS4X | ||
Ensembl ID: | ENSPPYG00000020462 | ||
Aliases: | None | ||
Description: | ribosomal protein S4, X-linked [Source:HGNC Symbol;Acc:10424] |
Percent Identity: | 79.55 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | MARGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALTGDEVKKICMQRFI |
.A.GPK.HLKRVAAP.HWMLDKLTGVFA..PSTGP.KLRECLP..IFLRNRLKYALTGDEVKKICMQ.FI | |
Retrocopy | VASGPKQHLKRVAAPQHWMLDKLTGVFAACPSTGPQKLRECLPH-IFLRNRLKYALTGDEVKKICMQWFI |
Parental | KIDGKVRTDITYPAGFMDVISIDKTGENFRLIYDTKGRFAVHRITPEEAKYKLCKVRKIFVGTKGIPHLV |
K.DGKVRTDITYP.GFMDVISIDK.GE.FRLIY.....FAV...TPEE..YKLCK.RKIFV.TKGI.HLV | |
Retrocopy | KVDGKVRTDITYPTGFMDVISIDKMGEGFRLIYGINCHFAVRHVTPEEVNYKLCKMRKIFVCTKGISHLV |
Parental | THDARTIRYPDPLIKVNDTIQIDLETGKITDFIKFDTGNLCMVTGGANLGRIGVITNRERHPGSFDVVHV |
.HDA.TI..PD.LIKVNDTIQIDLETGKIT...KFDTGNLC.VTGGAN.GRIGVITNRERHPGSFD..HV | |
Retrocopy | IHDAHTICHPDSLIKVNDTIQIDLETGKIT-ALKFDTGNLCLVTGGANWGRIGVITNRERHPGSFDMIHV |
Parental | KDANGNSFATRLSNIFVIGKGNKSWISLPRGKGIRLTIAEERDKRL-AAKQSSG |
KDAN.NSF....S.IFV..KGNK.WI.LP.GKGI..TIAE.RDKRL.AAKQSSG | |
Retrocopy | KDANSNSF----SIIFVVDKGNKPWIFLP*GKGIHFTIAEGRDKRL<AAKQSSG |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .11 RPM | 58 .39 RPM |
SRP007412_cerebellum | 0 .00 RPM | 73 .08 RPM |
SRP007412_heart | 0 .00 RPM | 87 .60 RPM |
SRP007412_kidney | 0 .10 RPM | 131 .16 RPM |
SRP007412_liver | 0 .03 RPM | 137 .65 RPM |