RetrogeneDB - Parental gene ENSPPYG00000020462 details

Parental gene:	RPS4X, ENSPPYG00000020462
Aliases:	None
Description:	ribosomal protein S4, X-linked [Source:HGNC Symbol;Acc:10424]
Organism:	*Orangutan (Pongo abelii)*
Coordinates:	X:69696039..69700820(-)

                            
>ENSPPYG00000020462
ATGGCTCGTGGTCCCAAGAAGCATCTGAAGCGGGTAGCAGCTCCAAAGCATTGGATGCTGGATAAATTGACCGGTGTGTT

TGCTCCTCGTCCATCCACCGGTCCTCACAAGTTGAGAGAGTGTCTCCCCCTCATCATTTTCCTAAGGAACAGACTTAAGT

ATGCCCTGACAGGAGATGAAGTAAAGAAGATTTGCATGCAGCGGTTCATTAAGATCGATGGCAAGGTCCGAACTGATATA

ACCTATCCTGCTGGATTCATGGATGTCATCAGCATTGACAAGACGGGAGAGAATTTCCGTCTGATCTATGACACCAAGGG

TCGCTTTGCTGTACACCGTATTACACCTGAGGAGGCCAAGTATAAGTTGTGCAAAGTGAGAAAGATCTTTGTGGGCACAA

AAGGAATCCCTCATCTGGTGACTCATGATGCCCGCACCATCCGCTACCCCGATCCCCTCATCAAGGTGAATGATACCATT

CAGATTGATTTGGAGACTGGCAAGATTACTGATTTCATCAAGTTCGACACTGGTAACCTGTGTATGGTGACTGGAGGTGC

TAACCTGGGAAGAATTGGTGTGATCACCAACAGAGAGAGGCACCCTGGATCTTTTGACGTGGTTCACGTGAAAGATGCCA

ATGGCAACAGCTTTGCCACTCGACTTTCCAACATTTTTGTTATTGGGAAGGGCAACAAATCATGGATTTCTCTTCCCCGA

GGAAAGGGTATCCGCCTCACCATTGCTGAAGAGAGAGACAAAAGACTGGCGGCCAAACAGAGCAGTGGGTGA

Library	Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex	58 .39 RPM
SRP007412_cerebellum	73 .08 RPM
SRP007412_heart	87 .60 RPM
SRP007412_kidney	131 .16 RPM
SRP007412_liver	137 .65 RPM

Species	Parental gene accession	Homology type	Retrogenes number
Anolis carolinensis	ENSACAG00000014601	ortholog_one2many	1 retrogene	retro_acar_82,
Bos taurus	ENSBTAG00000018800	possible_ortholog	5 retrogenes	retro_btau_119, retro_btau_125, retro_btau_146, retro_btau_33, retro_btau_76,
Canis familiaris	ENSCAFG00000017151	ortholog_one2one	2 retrogenes	retro_cfam_165, retro_cfam_194,
Callithrix jacchus	ENSCJAG00000004192	ortholog_one2one	2 retrogenes	retro_cjac_19, retro_cjac_361,
Cavia porcellus	ENSCPOG00000006337	possible_ortholog	3 retrogenes	retro_cpor_1023, retro_cpor_1075, retro_cpor_31,
Equus caballus	ENSECAG00000010852	possible_ortholog	6 retrogenes	retro_ecab_34, retro_ecab_435, retro_ecab_443, retro_ecab_614, retro_ecab_757, retro_ecab_850,
Homo sapiens	ENSG00000129824	possible_ortholog	1 retrogene	retro_hsap_1704,
Homo sapiens	ENSG00000198034	ortholog_one2one	19 retrogenes	retro_hsap_1070, retro_hsap_1151, retro_hsap_120, retro_hsap_1204, retro_hsap_1792, retro_hsap_1868, retro_hsap_2026, retro_hsap_2051, retro_hsap_2052, retro_hsap_2270, retro_hsap_2437, retro_hsap_2443, retro_hsap_3162, retro_hsap_3423, retro_hsap_3519, retro_hsap_3986, retro_hsap_4051, retro_hsap_656, retro_hsap_875,
Loxodonta africana	ENSLAFG00000002654	possible_ortholog	4 retrogenes	retro_lafr_1007, retro_lafr_1081, retro_lafr_1238, retro_lafr_208,
Macropus eugenii	ENSMEUG00000007969	possible_ortholog	16 retrogenes	retro_meug_131, retro_meug_141, retro_meug_1644, retro_meug_1732, retro_meug_1814, retro_meug_194, retro_meug_2098, retro_meug_2121, retro_meug_228, retro_meug_562, retro_meug_628, retro_meug_673, retro_meug_843, retro_meug_872, retro_meug_972, retro_meug_999,
Meleagris gallopavo	ENSMGAG00000009671	ortholog_many2many	1 retrogene	retro_mgal_3,
Microcebus murinus	ENSMICG00000016606	ortholog_one2one	58 retrogenes	retro_mmur_1107, retro_mmur_1108, retro_mmur_1123, retro_mmur_1136, retro_mmur_1168, retro_mmur_1208, retro_mmur_1209, retro_mmur_1229, retro_mmur_1231, retro_mmur_1257, retro_mmur_1268, retro_mmur_1334, retro_mmur_1411, retro_mmur_1416, retro_mmur_1430, retro_mmur_1442, retro_mmur_1454, retro_mmur_1467, retro_mmur_1471, retro_mmur_1519, retro_mmur_1578, retro_mmur_1584, retro_mmur_1599, retro_mmur_1600, retro_mmur_1611, retro_mmur_166, retro_mmur_241, retro_mmur_281, retro_mmur_289, retro_mmur_293, retro_mmur_347, retro_mmur_363, retro_mmur_390, retro_mmur_510, retro_mmur_511, retro_mmur_521, retro_mmur_523, retro_mmur_530, retro_mmur_54, retro_mmur_551, retro_mmur_591, retro_mmur_609, retro_mmur_619, retro_mmur_663, retro_mmur_665, retro_mmur_687, retro_mmur_767, retro_mmur_784, retro_mmur_828, retro_mmur_840, retro_mmur_917, retro_mmur_918, retro_mmur_931, retro_mmur_943, retro_mmur_946, retro_mmur_949, retro_mmur_96, retro_mmur_995,
Monodelphis domestica	ENSMODG00000011070	possible_ortholog	1 retrogene	retro_mdom_238,
Mustela putorius furo	ENSMPUG00000005294	possible_ortholog	11 retrogenes	retro_mputfur_1044, retro_mputfur_1176, retro_mputfur_1325, retro_mputfur_1326, retro_mputfur_1393, retro_mputfur_160, retro_mputfur_205, retro_mputfur_48, retro_mputfur_725, retro_mputfur_876, retro_mputfur_988,
Mus musculus	ENSMUSG00000031320	ortholog_one2one	13 retrogenes	retro_mmus_1092, retro_mmus_1686, retro_mmus_2052, retro_mmus_2197, retro_mmus_2487, retro_mmus_2541, retro_mmus_2916, retro_mmus_3025, retro_mmus_3702, retro_mmus_499, retro_mmus_797, retro_mmus_92, retro_mmus_987,
Nomascus leucogenys	ENSNLEG00000018121	ortholog_one2one	25 retrogenes	retro_nleu_1127, retro_nleu_1226, retro_nleu_1361, retro_nleu_142, retro_nleu_1442, retro_nleu_1907, retro_nleu_1908, retro_nleu_2089, retro_nleu_2256, retro_nleu_244, retro_nleu_2461, retro_nleu_2495, retro_nleu_2587, retro_nleu_2613, retro_nleu_2640, retro_nleu_2646, retro_nleu_2776, retro_nleu_2801, retro_nleu_2932, retro_nleu_2967, retro_nleu_2968, retro_nleu_486, retro_nleu_500, retro_nleu_560, retro_nleu_947,
Otolemur garnettii	ENSOGAG00000011808	possible_ortholog	2 retrogenes	retro_ogar_121, retro_ogar_229,
Procavia capensis	ENSPCAG00000000761	possible_ortholog	3 retrogenes	retro_pcap_334, retro_pcap_35, retro_pcap_360,
Pan troglodytes	ENSPTRG00000022025	ortholog_one2one	9 retrogenes	retro_ptro_1280, retro_ptro_131, retro_ptro_1366, retro_ptro_1367, retro_ptro_1408, retro_ptro_2276, retro_ptro_3032, retro_ptro_728, retro_ptro_784,
Pan troglodytes	ENSPTRG00000022470	possible_ortholog	1 retrogene	retro_ptro_1153,
Pteropus vampyrus	ENSPVAG00000012882	possible_ortholog	21 retrogenes	retro_pvam_1021, retro_pvam_1082, retro_pvam_1158, retro_pvam_1264, retro_pvam_1298, retro_pvam_1312, retro_pvam_1327, retro_pvam_1364, retro_pvam_1419, retro_pvam_177, retro_pvam_191, retro_pvam_214, retro_pvam_219, retro_pvam_335, retro_pvam_473, retro_pvam_628, retro_pvam_714, retro_pvam_809, retro_pvam_835, retro_pvam_921, retro_pvam_930,
Rattus norvegicus	ENSRNOG00000003201	possible_ortholog	1 retrogene	retro_rnor_135,
Sus scrofa	ENSSSCG00000012405	ortholog_one2one	5 retrogenes	retro_sscr_1070, retro_sscr_563, retro_sscr_580, retro_sscr_665, retro_sscr_973,
Ictidomys tridecemlineatus	ENSSTOG00000028692	possible_ortholog	8 retrogenes	retro_itri_1179, retro_itri_1607, retro_itri_291, retro_itri_306, retro_itri_368, retro_itri_495, retro_itri_738, retro_itri_985,
Vicugna pacos	ENSVPAG00000010952	ortholog_one2one	4 retrogenes	retro_vpac_244, retro_vpac_460, retro_vpac_604, retro_vpac_653,

#	RetrogeneDB ID	Identity (%)	Coverage (%)	ORF conservation	Expression evidence	RDV
1.	retro_pabe_340	96.58	100.00	Please wait, loading	Please wait, loading	Please wait, loading
2.	retro_pabe_493	76.89	84.41	Please wait, loading	Please wait, loading	Please wait, loading
3.	retro_pabe_579	86.87	98.48	Please wait, loading	Please wait, loading	Please wait, loading
4.	retro_pabe_580	85.96	89.35	Please wait, loading	Please wait, loading	Please wait, loading
5.	retro_pabe_679	86.84	71.86	Please wait, loading	Please wait, loading	Please wait, loading
6.	retro_pabe_891	87.92	100.00	Please wait, loading	Please wait, loading	Please wait, loading
7.	retro_pabe_921	93.94	100.00	Please wait, loading	Please wait, loading	Please wait, loading
8.	retro_pabe_954	91.03	59.32	Please wait, loading	Please wait, loading	Please wait, loading
9.	retro_pabe_1005	90.78	82.51	Please wait, loading	Please wait, loading	Please wait, loading
10.	retro_pabe_1401	73.21	63.88	Please wait, loading	Please wait, loading	Please wait, loading
11.	retro_pabe_1472	86.80	74.52	Please wait, loading	Please wait, loading	Please wait, loading
12.	retro_pabe_1524	88.97	54.75	Please wait, loading	Please wait, loading	Please wait, loading
13.	retro_pabe_1586	77.88	80.99	Please wait, loading	Please wait, loading	Please wait, loading
14.	retro_pabe_1657	81.54	73.76	Please wait, loading	Please wait, loading	Please wait, loading
15.	retro_pabe_1673	79.55	100.00	Please wait, loading	Please wait, loading	Please wait, loading
16.	retro_pabe_1702	80.74	50.95	Please wait, loading	Please wait, loading	Please wait, loading
17.	retro_pabe_1784	91.02	96.58	Please wait, loading	Please wait, loading	Please wait, loading
18.	retro_pabe_1948	80.08	100.00	Please wait, loading	Please wait, loading	Please wait, loading
19.	retro_pabe_2455	79.56	68.44	Please wait, loading	Please wait, loading	Please wait, loading
20.	retro_pabe_2629	86.11	68.44	Please wait, loading	Please wait, loading	Please wait, loading
21.	retro_pabe_2836	83.90	77.57	Please wait, loading	Please wait, loading	Please wait, loading
22.	retro_pabe_2923	85.88	63.88	Please wait, loading	Please wait, loading	Please wait, loading
23.	retro_pabe_3275	80.00	71.86	Please wait, loading	Please wait, loading	Please wait, loading
24.	retro_pabe_3325	79.90	76.81	Please wait, loading	Please wait, loading	Please wait, loading

Download FASTA sequences of all ENSPPYG00000020462 retrocopies

Parental gene:

RPS4X, ENSPPYG00000020462