RetrogeneDB ID: | retro_pabe_2455 | ||
Retrocopylocation | Organism: | Orangutan (Pongo abelii) | |
Coordinates: | 4:92964911..92965441(+) | ||
Located in intron of: | ENSPPYG00000014928 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS4X | ||
Ensembl ID: | ENSPPYG00000020462 | ||
Aliases: | None | ||
Description: | ribosomal protein S4, X-linked [Source:HGNC Symbol;Acc:10424] |
Percent Identity: | 79.56 % |
Parental protein coverage: | 68.44 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | MARGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALTGDEVKKICMQRFI |
.ARGPKKHLK.VAAPKHWML.KLTG.FAP.P.TGPHKLRECLPLI.FLRNRLKYALTGDE...I.MQ.FI | |
Retrocopy | IARGPKKHLKPVAAPKHWMLHKLTGIFAPCPLTGPHKLRECLPLIVFLRNRLKYALTGDE---IYMQSFI |
Parental | KIDGKVRTDITYPAGFMDVISIDKTGENFRLIYDTKGRFAVHRITPEEAKYKLCKVRKI-FVGTKGIPHL |
K.DGKVR.D.TYPAGFMDVISI.KTGE.F.L.YDTKG.FAVHRIT.EEAKYKLCKVRKI...G.KGIPHL | |
Retrocopy | KTDGKVRVDSTYPAGFMDVISIEKTGEHFHLVYDTKGCFAVHRITVEEAKYKLCKVRKI<YCGMKGIPHL |
Parental | VTHDARTIRYPDPLIKVNDTIQIDLETGKITDFIKFDTGNL |
VTHDA.TIRYP.PLIK.N.T.Q.DL.TGKI..F.KFD.GN. | |
Retrocopy | VTHDA*TIRYPNPLIKMNETVQTDLGTGKIINFTKFDMGNV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 58 .39 RPM |
SRP007412_cerebellum | 0 .12 RPM | 73 .08 RPM |
SRP007412_heart | 9 .57 RPM | 87 .60 RPM |
SRP007412_kidney | 39 .41 RPM | 131 .16 RPM |
SRP007412_liver | 29 .81 RPM | 137 .65 RPM |