RetrogeneDB ID: | retro_mmus_2052 | ||
Retrocopylocation | Organism: | Mouse (Mus musculus) | |
Coordinates: | 2:83353159..83353949(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSMUSG00000081400 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Rps4x | ||
Ensembl ID: | ENSMUSG00000031320 | ||
Aliases: | Rps4x, Rps4, Rps4-1 | ||
Description: | ribosomal protein S4, X-linked [Source:MGI Symbol;Acc:MGI:98158] |
Percent Identity: | 96.97 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | MARGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALTGDEVKKICMQRFI |
MARGPKKHLK.VAAPKH.MLDKLTGVFAPRPSTGPHKLREC.PLIIFLRNRLKYALTGDEVKKICMQRFI | |
Retrocopy | MARGPKKHLKCVAAPKH*MLDKLTGVFAPRPSTGPHKLRECPPLIIFLRNRLKYALTGDEVKKICMQRFI |
Parental | KIDGKVRTDITYPAGFMDVISIDKTGENFRLIYDTKGRFAVHRITPEEAKYKLCKVRKIFVGTKGIPHLV |
KID.KVRTDITYPAGFMDVISIDKTGENFRLIYDTKGRFAVHRITPEEA.YKLCKVRKIFVGTKGIPHLV | |
Retrocopy | KIDVKVRTDITYPAGFMDVISIDKTGENFRLIYDTKGRFAVHRITPEEAQYKLCKVRKIFVGTKGIPHLV |
Parental | THDARTIRYPDPLIKVNDTIQIDLETGKITDFIKFDTGNLCMVTGGANLGRIGVITNRERHPGS-FDVVH |
THDARTIRYPDPLIKVNDTIQIDLETGKITDFIKFDTGNLCMVTGGANLG.IGVITNRERHPGS.FDVVH | |
Retrocopy | THDARTIRYPDPLIKVNDTIQIDLETGKITDFIKFDTGNLCMVTGGANLGKIGVITNRERHPGS>FDVVH |
Parental | VKDANGNSFATRLSNIFVIGKGNKPWISLPRGKGIRLTIAEERDKRLAAKQSSG |
VKDANGNSFATRLSNIFVIG.GNKPWISLPRGKGIRLTIAEERDKRLAAKQSSG | |
Retrocopy | VKDANGNSFATRLSNIFVIGNGNKPWISLPRGKGIRLTIAEERDKRLAAKQSSG |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .23 RPM | 93 .43 RPM |
SRP007412_cerebellum | 1 .04 RPM | 46 .29 RPM |
SRP007412_heart | 0 .12 RPM | 123 .84 RPM |
SRP007412_kidney | 1 .12 RPM | 110 .38 RPM |
SRP007412_liver | 1 .17 RPM | 108 .09 RPM |
SRP007412_testis | 0 .23 RPM | 8 .42 RPM |
TSS No. | TSS Name | TSS expression level (Expr) in TPM range: | ||||
---|---|---|---|---|---|---|
no expression | 0 < Expr ≤ 1 | 1 < Expr ≤ 5 | 5 < Expr ≤ 10 | Expr > 10 | ||
TSS #1 | TSS_89468 | 2 libraries | 0 libraries | 1 library | 7 libraries | 1062 libraries |