RetrogeneDB ID: | retro_mmus_499 | ||
Retrocopylocation | Organism: | Mouse (Mus musculus) | |
Coordinates: | 1:148650543..148651113(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Rps4x | ||
Ensembl ID: | ENSMUSG00000031320 | ||
Aliases: | Rps4x, Rps4, Rps4-1 | ||
Description: | ribosomal protein S4, X-linked [Source:MGI Symbol;Acc:MGI:98158] |
Percent Identity: | 78.65 % |
Parental protein coverage: | 71.86 % |
Number of stop codons detected: | 4 |
Number of frameshifts detected | 3 |
Parental | LKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALTGDEV-KKICMQRFIKIDGKVR |
L..VAAPK...LDKLTG.FAP.PSTGPHKLRECLPLIIFLRNR...A.TGDEV.K.IC..RF.KIDGKVR | |
Retrocopy | LNHVAAPKR*ILDKLTGMFAPHPSTGPHKLRECLPLIIFLRNRF**AFTGDEV>KMICRNRFTKIDGKVR |
Parental | TDITYPAGFMDVISIDKTGENFRLIYDTKGRFAVHRITPEEA-KYKLCKVRKIFVGTKG-IPHLVTHDAR |
TDITYPAGFM..I.IDKT.ENFRLIYDTK..FA..RITPE.A.KYKLCKVRKIFVGTK...PHL...D.R | |
Retrocopy | TDITYPAGFMGIIIIDKTRENFRLIYDTKDCFALYRITPEKA>KYKLCKVRKIFVGTKN>TPHLLILDTR |
Parental | TIRYPDPLIKVNDTIQIDLETGKITDFIKFDTGNLCMVTGGANLGRIGVITN |
TI.YP.PLIKVNDTIQ.DL.T.KITDFIKF..GNLCMVTGGANLG.IGVITN | |
Retrocopy | TIQYPNPLIKVNDTIQFDL*TSKITDFIKFNAGNLCMVTGGANLGKIGVITN |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 93 .43 RPM |
SRP007412_cerebellum | 0 .00 RPM | 46 .29 RPM |
SRP007412_heart | 0 .00 RPM | 123 .84 RPM |
SRP007412_kidney | 0 .00 RPM | 110 .38 RPM |
SRP007412_liver | 0 .00 RPM | 108 .09 RPM |
SRP007412_testis | 0 .00 RPM | 8 .42 RPM |