RetrogeneDB ID: | retro_pabe_1657 | ||
Retrocopylocation | Organism: | Orangutan (Pongo abelii) | |
Coordinates: | 19:9883033..9883614(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS4X | ||
Ensembl ID: | ENSPPYG00000020462 | ||
Aliases: | None | ||
Description: | ribosomal protein S4, X-linked [Source:HGNC Symbol;Acc:10424] |
Percent Identity: | 81.54 % |
Parental protein coverage: | 73.76 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | IKIDGKVRTDITYPAGFMDVISIDKTGENFRLIYDTKGRFAVHRITPEEAKYKLCKVRKIFVGTKGIPHL |
.KIDGKV.TDITYPAGFM.VI.IDK.GENF.L..DTKG.FAV...TPEEAKY.LCK.RKIFVGTKGIPHL | |
Retrocopy | VKIDGKVQTDITYPAGFMNVINIDKMGENFHLTCDTKGHFAVQCTTPEEAKYMLCKLRKIFVGTKGIPHL |
Parental | VTHDARTIRYPDPLIKVNDTIQIDLETGKITDFIKFDTG-NLCMVTGGANLGRIGVITNRERHPGSFDVV |
VT.DA..I.YPDPLIKVNDTIQIDLETGKITDFIK.DTG.NLCMVTG.ANLGRIGVI.NRERH..SF.VV | |
Retrocopy | VTLDAHAICYPDPLIKVNDTIQIDLETGKITDFIKIDTG<NLCMVTGSANLGRIGVINNRERHRRSFNVV |
Parental | HVKDANGNSFATRLSNIFVIGKGNKSWISLPRGKGIRLTIAEERDKRLAAKQSSG |
HVK.ANGN.F.TRLSNIFVIGKGN..WISLP.GKGI.LTI.EE.DKRL.AKQS.G | |
Retrocopy | HVKEANGNRFVTRLSNIFVIGKGNRPWISLP*GKGIHLTIPEETDKRLVAKQSGG |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 58 .39 RPM |
SRP007412_cerebellum | 0 .00 RPM | 73 .08 RPM |
SRP007412_heart | 0 .00 RPM | 87 .60 RPM |
SRP007412_kidney | 0 .00 RPM | 131 .16 RPM |
SRP007412_liver | 0 .00 RPM | 137 .65 RPM |