Parental gene:

RPS4, ENSSSCG00000012405

Aliases:RPS4, Rps4x
Description:Sus scrofa ribosomal protein S4 (RPS4), mRNA. [Source:RefSeq mRNA;Acc:NM_001204283]
Organism:Pig (Sus scrofa)
Coordinates:X:65859100..65864948(-)


>ENSSSCG00000012405
ATGGCTCGTGGTCCCAAGAAACATCTGAAGCGCGTAGCAGCTCCAAAGCATTGGATGCTGGATAAACTGACCGGTGTGTT
TGCTCCTCGTCCATCTACTGGTCCCCACAAGTTGAGGGAATGTCTCCCCCTCATTATTTTCCTAAGGAACAGACTTAAGT
ATGCCCTAACAGGAGATGAAGTAAAGAAGATATGCATGCAGCGTTTCATTAAGATAGACGGCAAGGTCCGCACTGATATA
ACCTACCCCGCTGGTTTTATGGATGTCATCAGCATTGACAAGACTGGAGAGAATTTCCGTCTGATCTATGACACCAAGGG
TCGTTTTGCTGTTCATCGTATTACACCTGAGGAGGCCAAGTACAAGTTGTGCAAAGTGAGAAAGATATTTGTGGGCACAA
AAGGAATCCCTCACCTGGTCACCCACGATGCCCGTACCATCCGCTACCCTGATCCCCTCATCAAGGTGAATGACACCATT
CAAATTGATTTGGAGACTGGCAAGATCACTGATTTCATCAAATTTGATACTGGTAACCTATGCATGGTGACTGGAGGTGC
TAACCTGGGAAGAATTGGTGTGATCACCAACAGGGAGAGACATCCTGGTTCTTTCGATGTAGTCCATGTGAAAGATGCCA
ATGGCAACAGCTTCGCCACCCGGCTCTCCAACATTTTCGTTATTGGCAAAGGCAACAAACCATGGATCTCTCTTCCCCGT
GGAAAGGGTATTCGCCTCACCATTGCTGAGGAGAGAGACAAGAGACTGGCGGCCAAACAGAGCAGTGGATAA

Library Parental gene expression (RPM)
SRP014902_placenta 834 .21 RPM
SRP014902_testis 1531 .16 RPM
SRP018288_heart 637 .58 RPM
SRP018288_kidney 529 .37 RPM
SRP018288_liver 421 .52 RPM
SRP018288_lung 614 .32 RPM
SRP018856_adipose 2208 .15 RPM
SRP035408_brain 504 .45 RPM
SRP035408_liver 514 .78 RPM



Species Parental gene accession Homology type Retrogenes number
Anolis carolinensis ENSACAG00000014601 ortholog_one2many 1 retrogene
retro_acar_82,
Bos taurus ENSBTAG00000018800 possible_ortholog 5 retrogenes
retro_btau_119, retro_btau_125, retro_btau_146, retro_btau_33, retro_btau_76,
Canis familiaris ENSCAFG00000017151 ortholog_one2one 2 retrogenes
retro_cfam_165, retro_cfam_194,
Callithrix jacchus ENSCJAG00000004192 ortholog_one2one 2 retrogenes
retro_cjac_19, retro_cjac_361,
Cavia porcellus ENSCPOG00000006337 possible_ortholog 3 retrogenes
retro_cpor_1023, retro_cpor_1075, retro_cpor_31,
Equus caballus ENSECAG00000010852 possible_ortholog 6 retrogenes
retro_ecab_34, retro_ecab_435, retro_ecab_443, retro_ecab_614, retro_ecab_757, retro_ecab_850,
Homo sapiens ENSG00000129824 possible_ortholog 1 retrogene
retro_hsap_1704,
Homo sapiens ENSG00000198034 ortholog_one2one 19 retrogenes
retro_hsap_1070, retro_hsap_1151, retro_hsap_120, retro_hsap_1204, retro_hsap_1792, retro_hsap_1868, retro_hsap_2026, retro_hsap_2051, retro_hsap_2052, retro_hsap_2270, retro_hsap_2437, retro_hsap_2443, retro_hsap_3162, retro_hsap_3423, retro_hsap_3519, retro_hsap_3986, retro_hsap_4051, retro_hsap_656, retro_hsap_875,
Macropus eugenii ENSMEUG00000007969 possible_ortholog 16 retrogenes
retro_meug_131, retro_meug_141, retro_meug_1644, retro_meug_1732, retro_meug_1814, retro_meug_194, retro_meug_2098, retro_meug_2121, retro_meug_228, retro_meug_562, retro_meug_628, retro_meug_673, retro_meug_843, retro_meug_872, retro_meug_972, retro_meug_999,
Meleagris gallopavo ENSMGAG00000009671 ortholog_many2many 1 retrogene
retro_mgal_3,
Microcebus murinus ENSMICG00000016606 ortholog_one2one 58 retrogenes
retro_mmur_1107, retro_mmur_1108, retro_mmur_1123, retro_mmur_1136, retro_mmur_1168, retro_mmur_1208, retro_mmur_1209, retro_mmur_1229, retro_mmur_1231, retro_mmur_1257, retro_mmur_1268, retro_mmur_1334, retro_mmur_1411, retro_mmur_1416, retro_mmur_1430, retro_mmur_1442, retro_mmur_1454, retro_mmur_1467, retro_mmur_1471, retro_mmur_1519, retro_mmur_1578, retro_mmur_1584, retro_mmur_1599, retro_mmur_1600, retro_mmur_1611, retro_mmur_166, retro_mmur_241, retro_mmur_281, retro_mmur_289, retro_mmur_293, retro_mmur_347, retro_mmur_363, retro_mmur_390, retro_mmur_510, retro_mmur_511, retro_mmur_521, retro_mmur_523, retro_mmur_530, retro_mmur_54, retro_mmur_551, retro_mmur_591, retro_mmur_609, retro_mmur_619, retro_mmur_663, retro_mmur_665, retro_mmur_687, retro_mmur_767, retro_mmur_784, retro_mmur_828, retro_mmur_840, retro_mmur_917, retro_mmur_918, retro_mmur_931, retro_mmur_943, retro_mmur_946, retro_mmur_949, retro_mmur_96, retro_mmur_995,
Monodelphis domestica ENSMODG00000011070 possible_ortholog 1 retrogene
retro_mdom_238,
Mustela putorius furo ENSMPUG00000005294 possible_ortholog 11 retrogenes
retro_mputfur_1044, retro_mputfur_1176, retro_mputfur_1325, retro_mputfur_1326, retro_mputfur_1393, retro_mputfur_160, retro_mputfur_205, retro_mputfur_48, retro_mputfur_725, retro_mputfur_876, retro_mputfur_988,
Mus musculus ENSMUSG00000031320 ortholog_one2one 13 retrogenes
retro_mmus_1092, retro_mmus_1686, retro_mmus_2052, retro_mmus_2197, retro_mmus_2487, retro_mmus_2541, retro_mmus_2916, retro_mmus_3025, retro_mmus_3702, retro_mmus_499, retro_mmus_797, retro_mmus_92, retro_mmus_987,
Nomascus leucogenys ENSNLEG00000018121 ortholog_one2one 25 retrogenes
retro_nleu_1127, retro_nleu_1226, retro_nleu_1361, retro_nleu_142, retro_nleu_1442, retro_nleu_1907, retro_nleu_1908, retro_nleu_2089, retro_nleu_2256, retro_nleu_244, retro_nleu_2461, retro_nleu_2495, retro_nleu_2587, retro_nleu_2613, retro_nleu_2640, retro_nleu_2646, retro_nleu_2776, retro_nleu_2801, retro_nleu_2932, retro_nleu_2967, retro_nleu_2968, retro_nleu_486, retro_nleu_500, retro_nleu_560, retro_nleu_947,
Otolemur garnettii ENSOGAG00000011808 possible_ortholog 2 retrogenes
retro_ogar_121, retro_ogar_229,
Procavia capensis ENSPCAG00000000761 possible_ortholog 3 retrogenes
retro_pcap_334, retro_pcap_35, retro_pcap_360,
Pongo abelii ENSPPYG00000020462 ortholog_one2one 24 retrogenes
retro_pabe_1005, retro_pabe_1401, retro_pabe_1472, retro_pabe_1524, retro_pabe_1586, retro_pabe_1657, retro_pabe_1673, retro_pabe_1702, retro_pabe_1784, retro_pabe_1948, retro_pabe_2455, retro_pabe_2629, retro_pabe_2836, retro_pabe_2923, retro_pabe_3275, retro_pabe_3325, retro_pabe_340, retro_pabe_493, retro_pabe_579, retro_pabe_580, retro_pabe_679, retro_pabe_891, retro_pabe_921, retro_pabe_954,
Pan troglodytes ENSPTRG00000022025 ortholog_one2one 9 retrogenes
retro_ptro_1280, retro_ptro_131, retro_ptro_1366, retro_ptro_1367, retro_ptro_1408, retro_ptro_2276, retro_ptro_3032, retro_ptro_728, retro_ptro_784,
Pan troglodytes ENSPTRG00000022470 possible_ortholog 1 retrogene
retro_ptro_1153,
Rattus norvegicus ENSRNOG00000003201 possible_ortholog 1 retrogene
retro_rnor_135,
Vicugna pacos ENSVPAG00000010952 ortholog_one2one 4 retrogenes
retro_vpac_244, retro_vpac_460, retro_vpac_604, retro_vpac_653,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_sscr_563 81.82 54.37
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2. retro_sscr_580 81.82 54.37
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3. retro_sscr_665 84.83 54.37
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4. retro_sscr_973 85.23 100.00
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5. retro_sscr_1070 62.63 74.14
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Download FASTA sequences of all ENSSSCG00000012405 retrocopies