RetrogeneDB ID: | retro_pabe_2923 | ||
Retrocopylocation | Organism: | Orangutan (Pongo abelii) | |
Coordinates: | 6:157950030..157950532(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS4X | ||
Ensembl ID: | ENSPPYG00000020462 | ||
Aliases: | None | ||
Description: | ribosomal protein S4, X-linked [Source:HGNC Symbol;Acc:10424] |
Percent Identity: | 85.88 % |
Parental protein coverage: | 63.88 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | TGENFRLIYDTKGRFAVHRITPEEAKYKLCKVRKIFVGTKGIPHLVTHDARTIRYPDP-LIKVNDTIQID |
T.ENF.LIYDTK.RFAVHR..PEEAKYKLCKVRKIFVGTK.I.HLVTHDART.RYPDP.LI.VNDTIQID | |
Retrocopy | TRENFSLIYDTKDRFAVHRVIPEEAKYKLCKVRKIFVGTKRISHLVTHDARTVRYPDP<LIEVNDTIQID |
Parental | LETGKITDFIKFDTGNLCMVTGGANLGRIGVITNRERHPGSFDVVHVKDANGNSFATRLSNIFVIGKGNK |
LETGK..DFIKFDTG.LCMVTGGANLGRIGVI.N.ERHPGSFDVVH.KDANGNSFATRLSNIFVI.K.N. | |
Retrocopy | LETGKSIDFIKFDTGYLCMVTGGANLGRIGVIIN*ERHPGSFDVVHEKDANGNSFATRLSNIFVISKSNE |
Parental | SWISLPRGKGIRLTIAEERDK-RLAAKQSS |
.WISL.RGK.IRLTIAEERDK.RLAAK.SS | |
Retrocopy | PWISLSRGKDIRLTIAEERDK<RLAAKPSS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .28 RPM | 58 .39 RPM |
SRP007412_cerebellum | 0 .97 RPM | 73 .08 RPM |
SRP007412_heart | 0 .54 RPM | 87 .60 RPM |
SRP007412_kidney | 1 .19 RPM | 131 .16 RPM |
SRP007412_liver | 0 .98 RPM | 137 .65 RPM |