RetrogeneDB ID: | retro_pabe_921 | ||
Retrocopylocation | Organism: | Orangutan (Pongo abelii) | |
Coordinates: | 12:47241513..47242298(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS4X | ||
Ensembl ID: | ENSPPYG00000020462 | ||
Aliases: | None | ||
Description: | ribosomal protein S4, X-linked [Source:HGNC Symbol;Acc:10424] |
Percent Identity: | 93.94 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | MARGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALTGDEVKKICMQRFI |
MA.GPKKHLK.VAAPKHWMLDKLTGVFAP.PST.PHKLRECLPLIIFLRNRLKYALTGDEVKKICMQ.FI | |
Retrocopy | MAHGPKKHLKQVAAPKHWMLDKLTGVFAPCPSTSPHKLRECLPLIIFLRNRLKYALTGDEVKKICMQQFI |
Parental | KIDGKVRTDITYPAGFMDVISIDKTGENFRLIYDTKGRFAVHRITPEEAKYKLCKVRKIFVGTKGIPHLV |
KIDGKVRTDITYP.GFMDVISIDKTGENFRLI.DTKG.FAVHRITPE.AKYKLCKVRKIFVGTKGIPHLV | |
Retrocopy | KIDGKVRTDITYPTGFMDVISIDKTGENFRLICDTKGCFAVHRITPE-AKYKLCKVRKIFVGTKGIPHLV |
Parental | THDARTIRYPDPLIKVNDTIQIDLETGKITDFIKFDTGNLCMVTGGANLGRIGVITNRERHPGSFDVVHV |
THDARTI.YPDPLIKVNDTIQIDLETGKITDFIKFDTGNLCMVTGGANLGRIGVITNRERHPGSFDVVH. | |
Retrocopy | THDARTICYPDPLIKVNDTIQIDLETGKITDFIKFDTGNLCMVTGGANLGRIGVITNRERHPGSFDVVHM |
Parental | KDANGNSFATRLSNIFVI-GKGNKSWISLPRGKGIRLTIAEERDKRLAAKQSSG |
KDANGNSFATRLSNIFV..GKGNK.WISLPRGKGI.LTIAEERDKRL.AKQSSG | |
Retrocopy | KDANGNSFATRLSNIFVM<GKGNKPWISLPRGKGICLTIAEERDKRLVAKQSSG |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 2 .60 RPM | 58 .39 RPM |
SRP007412_cerebellum | 0 .61 RPM | 73 .08 RPM |
SRP007412_heart | 3 .91 RPM | 87 .60 RPM |
SRP007412_kidney | 4 .28 RPM | 131 .16 RPM |
SRP007412_liver | 4 .53 RPM | 137 .65 RPM |