RetrogeneDB ID: | retro_mmur_619 | ||
Retrocopylocation | Organism: | Mouse Lemur (Microcebus murinus) | |
Coordinates: | GeneScaffold_4234:125699..126315(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS4X | ||
Ensembl ID: | ENSMICG00000016606 | ||
Aliases: | None | ||
Description: | ribosomal protein S4, X-linked [Source:HGNC Symbol;Acc:10424] |
Percent Identity: | 76.56 % |
Parental protein coverage: | 78.33 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 2 |
Parental | MARGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECL-PLIIFLRNRL-KYALTGDEVKKICMQR |
M.RGPKKHLKRVAAPKHWML.KLT.VF.P.PST.PHKLRECL.P...F.R.....YAL.GD.VK.IC.QR | |
Retrocopy | MSRGPKKHLKRVAAPKHWMLGKLTRVFSPPPSTSPHKLRECL<PIHHFPREQT*VYALAGDKVK-ICIQR |
Parental | FIKIDGKVRTDITYPAGFMDVISIDKTGENFRLIYDTKGRFAVHRITPEEAKYKLCKVRKIFVGTKGIPH |
F...D.KV.T.ITYPAGFMDVISIDKT.ENFRLIYD.KGRFAV..IT.E.AK.KLCKV.KIFVGTKG.PH | |
Retrocopy | FLNVDCKVWTAITYPAGFMDVISIDKTRENFRLIYDPKGRFAVYCITSEKAK*KLCKVGKIFVGTKGTPH |
Parental | LVTHDARTIRYP-DPLIKVNDTIQIDLETGKITDFIKFDTGNLCMVTGGANLGRIGVITNRERHPGSFD |
LVT.D..TI.YP..PLIK.NDTIQ.DLETGKITDFIKFDTGNLC.VTGG.NL..IGV.TNRERHPGSF. | |
Retrocopy | LVTPDGHTI*YP<CPLIKGNDTIQADLETGKITDFIKFDTGNLCVVTGGVNLDGIGVVTNRERHPGSFE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |