RetrogeneDB ID: | retro_sscr_665 | ||
Retrocopylocation | Organism: | Pig (Sus scrofa) | |
Coordinates: | 2:53164172..53164601(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSSSCG00000022191 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS4 | ||
Ensembl ID: | ENSSSCG00000012405 | ||
Aliases: | RPS4, Rps4x | ||
Description: | Sus scrofa ribosomal protein S4 (RPS4), mRNA. [Source:RefSeq mRNA;Acc:NM_001204283] |
Percent Identity: | 84.83 % |
Parental protein coverage: | 54.37 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 2 |
Parental | PKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALTGDEVKKICMQRFIKIDG |
PKKHL..VAAPKHWMLDKLTGVFAP.PS.GPHKLRECLPLIIFLRNRLKYALTG.EVKKICMQRFIKI.. | |
Retrocopy | PKKHLELVAAPKHWMLDKLTGVFAPHPSIGPHKLRECLPLIIFLRNRLKYALTGNEVKKICMQRFIKINA |
Parental | -KVRTDITYPAGFMDVISIDKTGENFRLIYDTKGRFAVHRITPEEAKYKL-CKVRKIFVGTKGIPHLVTH |
.KV.TDITYPAGF.D.ISI.KTGENF.LI.DTKGRFA.HRITPEEAKYKL.CKVR..FVGTKGIPHLVTH | |
Retrocopy | <KVHTDITYPAGFRDIISIEKTGENFHLICDTKGRFAIHRITPEEAKYKL>CKVRRMFVGTKGIPHLVTH |
Parental | DARTI |
...T. | |
Retrocopy | TILTL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP014902_placenta | 0 .13 RPM | 834 .21 RPM |
SRP014902_testis | 0 .00 RPM | 1531 .16 RPM |
SRP018288_heart | 0 .10 RPM | 637 .58 RPM |
SRP018288_kidney | 0 .00 RPM | 529 .37 RPM |
SRP018288_liver | 0 .00 RPM | 421 .52 RPM |
SRP018288_lung | 0 .10 RPM | 614 .32 RPM |
SRP018856_adipose | 0 .26 RPM | 2208 .15 RPM |
SRP035408_brain | 0 .16 RPM | 504 .45 RPM |
SRP035408_liver | 0 .15 RPM | 514 .78 RPM |