RetrogeneDB ID: | retro_mmus_2197 | ||
Retrocopylocation | Organism: | Mouse (Mus musculus) | |
Coordinates: | 3:112302371..112303160(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Rps4x | ||
Ensembl ID: | ENSMUSG00000031320 | ||
Aliases: | Rps4x, Rps4, Rps4-1 | ||
Description: | ribosomal protein S4, X-linked [Source:MGI Symbol;Acc:MGI:98158] |
Percent Identity: | 91.63 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 0 |
Parental | MARGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALTGDEVKKICMQRFI |
M.RGPKKHLKRVAAPKHWML.KLTG.F.PRPSTGPHKLRECLPLIIFLRNRLKY.LTGDEVKKICMQRFI | |
Retrocopy | MVRGPKKHLKRVAAPKHWMLNKLTGMFVPRPSTGPHKLRECLPLIIFLRNRLKYDLTGDEVKKICMQRFI |
Parental | KIDGKVRTDITYPAGFMDVISIDKTGENFRLIYDTKGRFAVHRITPEEAKYKLCKVRKIFVGTKGIPHLV |
KIDGK.RTDI.YPAGF.DVISIDKTGENFRLIYDTKGRFAVHRITPEEAKYKLCKVRKIFVGTKGI.HLV | |
Retrocopy | KIDGKIRTDIIYPAGFKDVISIDKTGENFRLIYDTKGRFAVHRITPEEAKYKLCKVRKIFVGTKGISHLV |
Parental | THDARTIRYPDPLIKVNDTIQIDLETGKITDFIKFDTGNLCMVTGGANLGRIGVITNRERHPGSFDVVHV |
THDA.TIRYPDPLIKV.DTIQI..ETGKITDFIKFDTGNLCMVTGGAN.GRIGVITNRERHPGSFDVVHV | |
Retrocopy | THDAYTIRYPDPLIKVSDTIQIE*ETGKITDFIKFDTGNLCMVTGGANMGRIGVITNRERHPGSFDVVHV |
Parental | KDANGNSFATRLSNIFVIGKGNKPWISLPRGKGIRLTIAEERDKRLAAKQSSG |
KDANGNSF.TR.SN.FVI.KGNKPWISLP..KGI.LTIAEERDKRLAAKQ.SG | |
Retrocopy | KDANGNSFVTRVSNPFVINKGNKPWISLP*EKGISLTIAEERDKRLAAKQNSG |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 93 .43 RPM |
SRP007412_cerebellum | 0 .00 RPM | 46 .29 RPM |
SRP007412_heart | 0 .03 RPM | 123 .84 RPM |
SRP007412_kidney | 0 .17 RPM | 110 .38 RPM |
SRP007412_liver | 0 .03 RPM | 108 .09 RPM |
SRP007412_testis | 0 .00 RPM | 8 .42 RPM |