RetrogeneDB ID: | retro_sscr_1070 | ||
Retrocopylocation | Organism: | Pig (Sus scrofa) | |
Coordinates: | 9:129835760..129836338(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS4 | ||
Ensembl ID: | ENSSSCG00000012405 | ||
Aliases: | RPS4, Rps4x | ||
Description: | Sus scrofa ribosomal protein S4 (RPS4), mRNA. [Source:RefSeq mRNA;Acc:NM_001204283] |
Percent Identity: | 62.63 % |
Parental protein coverage: | 74.14 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 3 |
Parental | RNRLKYALTGDEVKKICMQRFIKIDGKVRTDITYPAGF-MDVISIDKTGENFRLIYDTKGRFAVHRITPE |
.NRLKYA.TGD.VKK..MQ.FIK.DGK..T..TYPAGF..DVIS.DKT.EN..L..DTKG...V..IT.E | |
Retrocopy | KNRLKYA*TGDKVKKTRMQEFIKVDGKIPTGMTYPAGF>TDVISLDKTRENLHLFLDTKGHY-VCCITHE |
Parental | EAKYKLCKVRKIFVGTK-GIPHLVTHDARTIRYPDPLIKVNDTIQIDLETGKITDFIKFDTGNLCMVTGG |
..KYKL.KV.KIF.GTK.G.PHLV..DA.T..YPDPLIKV.DTI..D..T...T.F.KF.TGN..MVT.G | |
Retrocopy | QNKYKLYKVKKIFMGTK<GLPHLVILDAPTN*YPDPLIKVDDTIWTDVQTNRMTHFVKFNTGNVYMVTRG |
Parental | ANLGRIGVITNRERHPGSFDVVHVKDANGNSFATRLSNIFVIGK-GNKPWISLPRGKG |
.NLG.IGVITNR.R.PGS.D.V..KDA.GNSF.T.LS...V..K..NKP...LP..KG | |
Retrocopy | GNLGKIGVITNRDRTPGSLDMVCMKDAKGNSFFTWLSK-KVLAK<SNKPQTTLPPEKG |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP014902_placenta | 0 .00 RPM | 834 .21 RPM |
SRP014902_testis | 0 .00 RPM | 1531 .16 RPM |
SRP018288_heart | 0 .00 RPM | 637 .58 RPM |
SRP018288_kidney | 0 .00 RPM | 529 .37 RPM |
SRP018288_liver | 0 .00 RPM | 421 .52 RPM |
SRP018288_lung | 0 .00 RPM | 614 .32 RPM |
SRP018856_adipose | 0 .00 RPM | 2208 .15 RPM |
SRP035408_brain | 0 .00 RPM | 504 .45 RPM |
SRP035408_liver | 0 .00 RPM | 514 .78 RPM |
Species | RetrogeneDB ID |
---|---|
Equus caballus | retro_ecab_850 |