RetrogeneDB ID: | retro_cjac_19 | ||
Retrocopylocation | Organism: | Marmoset (Callithrix jacchus) | |
Coordinates: | 6:84473663..84474455(-) | ||
Located in intron of: | ENSCJAG00000011678 | ||
Retrocopyinformation | Ensembl ID: | ENSCJAG00000022842 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS4X | ||
Ensembl ID: | ENSCJAG00000004192 | ||
Aliases: | None | ||
Description: | ribosomal protein S4, X-linked [Source:HGNC Symbol;Acc:10424] |
Percent Identity: | 98.1 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MARGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALTGDEVKKICMQRFI |
MA.GPKKHLKRVAAPKHWMLDKLTGVFAPRPST.PHKLRECLP.IIFLRNRLKYALTGDEVKKICMQRFI | |
Retrocopy | MAHGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTSPHKLRECLPIIIFLRNRLKYALTGDEVKKICMQRFI |
Parental | KIDGKVRTDITYPAGFMDVISIDKTGENFRLIYDTKGRFAVHRITPEEAKYKLCKVRKIFVGTKGIPHLV |
KIDGKVRTDITYPAGFMDVISIDKTGENFRLIYDTKGRFAVHRI.PEEAKYKLCKVRKIFVGTKGIPHLV | |
Retrocopy | KIDGKVRTDITYPAGFMDVISIDKTGENFRLIYDTKGRFAVHRIKPEEAKYKLCKVRKIFVGTKGIPHLV |
Parental | THDARTIRYPDPLIKVNDTIQIDLETGKITDFIKFDTGNLCMVTGGANLGRIGVITNRERHPGSFDVVHV |
THDARTIRYPDPLIKVNDTIQIDLETGKITDFIKFDTGNLCMVTGGANLGRIGVITNRERHPGSFDVVHV | |
Retrocopy | THDARTIRYPDPLIKVNDTIQIDLETGKITDFIKFDTGNLCMVTGGANLGRIGVITNRERHPGSFDVVHV |
Parental | KDANGNSFATRLSNIFVIGKGNKPWISLPRGKGIRLTIAEERDKRLAAKQSSG |
KDANGNSFATRLSNIFVIGKGNKPWISLP.GKGIRLTIAEERDKRLAAKQSSG | |
Retrocopy | KDANGNSFATRLSNIFVIGKGNKPWISLPQGKGIRLTIAEERDKRLAAKQSSG |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP051959_colon | 0 .29 RPM | 265 .92 RPM |
SRP051959_heart | 0 .21 RPM | 218 .03 RPM |
SRP051959_kidney | 0 .35 RPM | 261 .33 RPM |
SRP051959_liver | 0 .19 RPM | 246 .43 RPM |
SRP051959_lung | 0 .39 RPM | 258 .93 RPM |
SRP051959_lymph_node | 0 .34 RPM | 378 .41 RPM |
SRP051959_skeletal_muscle | 0 .57 RPM | 184 .29 RPM |
SRP051959_spleen | 0 .53 RPM | 339 .50 RPM |