RetrogeneDB ID: | retro_mmus_987 | ||
Retrocopylocation | Organism: | Mouse (Mus musculus) | |
Coordinates: | 13:3298885..3299425(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Rps4x | ||
Ensembl ID: | ENSMUSG00000031320 | ||
Aliases: | Rps4x, Rps4, Rps4-1 | ||
Description: | ribosomal protein S4, X-linked [Source:MGI Symbol;Acc:MGI:98158] |
Percent Identity: | 97.22 % |
Parental protein coverage: | 68.44 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MARGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALTGDEVKKICMQRFI |
MARGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALTGDEVK.ICMQRFI | |
Retrocopy | MARGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALTGDEVKEICMQRFI |
Parental | KIDGKVRTDITYPAGFMDVISIDKTGENFRLIYDTKGRFAVHRITPEEAKYKLCKVRKIFVGTKGIPHLV |
KIDGK.RT.I.YPAGFMDVISIDKTGENFRLIYDTKGRFAVHRITPEEAKYKLCKVRKIFVGTKGIPHLV | |
Retrocopy | KIDGKIRTGIIYPAGFMDVISIDKTGENFRLIYDTKGRFAVHRITPEEAKYKLCKVRKIFVGTKGIPHLV |
Parental | THDARTIRYPDPLIKVNDTIQIDLETGKITDFIKFDTGNL |
THDA.TIRYPDPLIKVNDTIQIDLETGKITDFIKFDTGNL | |
Retrocopy | THDALTIRYPDPLIKVNDTIQIDLETGKITDFIKFDTGNL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .58 RPM | 93 .43 RPM |
SRP007412_cerebellum | 0 .22 RPM | 46 .29 RPM |
SRP007412_heart | 0 .65 RPM | 123 .84 RPM |
SRP007412_kidney | 0 .52 RPM | 110 .38 RPM |
SRP007412_liver | 0 .25 RPM | 108 .09 RPM |
SRP007412_testis | 0 .00 RPM | 8 .42 RPM |
TSS No. | TSS Name | TSS expression level (Expr) in TPM range: | ||||
---|---|---|---|---|---|---|
no expression | 0 < Expr ≤ 1 | 1 < Expr ≤ 5 | 5 < Expr ≤ 10 | Expr > 10 | ||
TSS #1 | TSS_28452 | 297 libraries | 145 libraries | 167 libraries | 193 libraries | 270 libraries |