RetrogeneDB ID: | retro_mmur_240 | ||
Retrocopylocation | Organism: | Mouse Lemur (Microcebus murinus) | |
Coordinates: | GeneScaffold_1938:58367..58924(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL13A | ||
Ensembl ID: | ENSMICG00000009318 | ||
Aliases: | None | ||
Description: | ribosomal protein L13a [Source:HGNC Symbol;Acc:10304] |
Percent Identity: | 80.75 % |
Parental protein coverage: | 91.63 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 1 |
Parental | MAEGQVLVLDGRGHLL-GRLAAIVAKQVLLGRKVVVVRCEGINISGNFYRNKLKYLAFLRKRMNTNPSRG |
M.EGQVLVLDG.GHLL.G.LAAI.AKQVLLG.KVVVV.CEGI.ISGNFYRNKLKYLA.LRK.MNTNPS.G | |
Retrocopy | MVEGQVLVLDG*GHLL<GCLAAIMAKQVLLGQKVVVVCCEGISISGNFYRNKLKYLASLRK*MNTNPSQG |
Parental | PYHFRAPSRIFWRTVRGMLPHKTKRGQAALDRLKVFDGIPPPYDKKKRMVVPAALKVVRLKPTRKFAYLG |
P.HF..PS.IFWRT.RGMLPHKTKRGQAALDRL.VFDGIPPPYDKKK.MV.PAALKVVRLKPTRKFAY.. | |
Retrocopy | PNHFWVPSHIFWRTTRGMLPHKTKRGQAALDRLEVFDGIPPPYDKKKWMVNPAALKVVRLKPTRKFAYPR |
Parental | RLAHEVGWKYQAVTATLEEKRKEKAKIHYRKKKQLMRLRKQAEKNVE |
RLAHEVGWKYQ.VTATLEEKRKEKAKIHY.KK...........K..E | |
Retrocopy | RLAHEVGWKYQVVTATLEEKRKEKAKIHYWKKQAKKNVEEKIDKYTE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |