RetrogeneDB - Parental gene ENSPTRG00000011298 details

							
>ENSPTRG00000011298
ATGGCGGAGGTGCAGGTCCTGGTGCTTGATGGTCGAGGCCATCTCCTGGGCCGCCTGGCGGCCATCGTGGCTAAACAGGT

ACTGCTGGGCCGGAAGGTGGTGGTCGTACGCTGTGAAGGCATCAACATTTCTGGCAATTTCTACAGAAACAAGTTGAAGT

ACCTGGCTTTCCTCCGCAAGCGGATGAACACCAACCCTTCCCGAGGCCCCTACCACTTCCGGGCCCCCAGCCGCATCTTC

TGGCGGACCGTGCGAGGTATGCTGCCCCACAAAACCAAGCGAGGCCAGGCCGCTCTGGACCGTCTCAAGGTGTTTGACGG

CATCCCACCGCCCTACGACAAGAAAAAGCGGATGGTGGTTCCTGCTGCCCTCAAGGTCGTGCGTCTGAAGCCTACAAGAA

AGTTTGCCTATCTGGGGCGCCTGGCTCACGAGGTTGGCTGGAAGTACCAGGCAGTGACAGCCACCCTGGAGGAGAAGAGG

AAAGAGAAAGCCAAGATCCACTACCGGAAGAAGAAACAGCTCATGAGGCTACGGAAACAGGCCGAGAAGAACGTGGAGAA

GAAAATTGACAAATACACAGAGGTCCTCAAGACCCACGGACTCCTGGTCTGA

Library	Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex	270 .51 RPM
SRP007412_cerebellum	389 .75 RPM
SRP007412_heart	227 .81 RPM
SRP007412_kidney	485 .72 RPM
SRP007412_liver	439 .88 RPM
SRP007412_testis	85 .99 RPM

Species	Parental gene accession	Homology type	Retrogenes number
Bos taurus	ENSBTAG00000005296	possible_ortholog	3 retrogenes	retro_btau_1251, retro_btau_719, retro_btau_789,
Callithrix jacchus	ENSCJAG00000000072	possible_ortholog	16 retrogenes	retro_cjac_1130, retro_cjac_1706, retro_cjac_182, retro_cjac_197, retro_cjac_1997, retro_cjac_2170, retro_cjac_2322, retro_cjac_2467, retro_cjac_2468, retro_cjac_2665, retro_cjac_2699, retro_cjac_2755, retro_cjac_3009, retro_cjac_664, retro_cjac_941, retro_cjac_972,
Cavia porcellus	ENSCPOG00000012417	possible_ortholog	2 retrogenes	retro_cpor_1000, retro_cpor_888,
Equus caballus	ENSECAG00000015832	possible_ortholog	3 retrogenes	retro_ecab_388, retro_ecab_653, retro_ecab_773,
Erinaceus europaeus	ENSEEUG00000014071	possible_ortholog	6 retrogenes	retro_eeur_168, retro_eeur_310, retro_eeur_315, retro_eeur_484, retro_eeur_562, retro_eeur_618,
Echinops telfairi	ENSETEG00000017076	possible_ortholog	2 retrogenes	retro_etel_46, retro_etel_853,
Felis catus	ENSFCAG00000009194	possible_ortholog	4 retrogenes	retro_fcat_1197, retro_fcat_1649, retro_fcat_324, retro_fcat_548,
Loxodonta africana	ENSLAFG00000016213	ortholog_one2many	3 retrogenes	retro_lafr_1160, retro_lafr_576, retro_lafr_810,
Microcebus murinus	ENSMICG00000009318	ortholog_one2one	6 retrogenes	retro_mmur_240, retro_mmur_283, retro_mmur_311, retro_mmur_359, retro_mmur_65, retro_mmur_736,
Myotis lucifugus	ENSMLUG00000004945	possible_ortholog	10 retrogenes	retro_mluc_1015, retro_mluc_1342, retro_mluc_1836, retro_mluc_1894, retro_mluc_2219, retro_mluc_2221, retro_mluc_2427, retro_mluc_2471, retro_mluc_2506, retro_mluc_675,
Macaca mulatta	ENSMMUG00000007551	ortholog_one2one	14 retrogenes	retro_mmul_1100, retro_mmul_1256, retro_mmul_1638, retro_mmul_1756, retro_mmul_2179, retro_mmul_2249, retro_mmul_2352, retro_mmul_2399, retro_mmul_296, retro_mmul_500, retro_mmul_520, retro_mmul_547, retro_mmul_837, retro_mmul_924,
Mustela putorius furo	ENSMPUG00000002604	possible_ortholog	3 retrogenes	retro_mputfur_1418, retro_mputfur_853, retro_mputfur_935,
Mus musculus	ENSMUSG00000074129	possible_ortholog	3 retrogenes	retro_mmus_1129, retro_mmus_1334, retro_mmus_20,
Nomascus leucogenys	ENSNLEG00000005211	ortholog_one2one	23 retrogenes	retro_nleu_1173, retro_nleu_1429, retro_nleu_1568, retro_nleu_159, retro_nleu_1823, retro_nleu_1873, retro_nleu_1892, retro_nleu_1897, retro_nleu_2047, retro_nleu_228, retro_nleu_2398, retro_nleu_2415, retro_nleu_2463, retro_nleu_2614, retro_nleu_2789, retro_nleu_2928, retro_nleu_330, retro_nleu_392, retro_nleu_441, retro_nleu_475, retro_nleu_513, retro_nleu_744, retro_nleu_760,
Otolemur garnettii	ENSOGAG00000004625	ortholog_one2many	7 retrogenes	retro_ogar_1496, retro_ogar_211, retro_ogar_2254, retro_ogar_3148, retro_ogar_54, retro_ogar_596, retro_ogar_612,
Ochotona princeps	ENSOPRG00000001194	possible_ortholog	3 retrogenes	retro_opri_316, retro_opri_764, retro_opri_806,
Procavia capensis	ENSPCAG00000004086	possible_ortholog	4 retrogenes	retro_pcap_163, retro_pcap_290, retro_pcap_415, retro_pcap_416,
Pongo abelii	ENSPPYG00000010251	possible_ortholog	1 retrogene	retro_pabe_148,
Pteropus vampyrus	ENSPVAG00000010958	ortholog_one2many	3 retrogenes	retro_pvam_129, retro_pvam_625, retro_pvam_771,
Rattus norvegicus	ENSRNOG00000020618	possible_ortholog	10 retrogenes	retro_rnor_1073, retro_rnor_1112, retro_rnor_1212, retro_rnor_1292, retro_rnor_1357, retro_rnor_1742, retro_rnor_564, retro_rnor_593, retro_rnor_665, retro_rnor_988,
Sus scrofa	ENSSSCG00000003166	possible_ortholog	4 retrogenes	retro_sscr_290, retro_sscr_300, retro_sscr_392, retro_sscr_743,
Tarsius syrichta	ENSTSYG00000008791	possible_ortholog	4 retrogenes	retro_tsyr_1363, retro_tsyr_437, retro_tsyr_620, retro_tsyr_920,
Tursiops truncatus	ENSTTRG00000005485	possible_ortholog	7 retrogenes	retro_ttru_1304, retro_ttru_1736, retro_ttru_629, retro_ttru_735, retro_ttru_833, retro_ttru_971, retro_ttru_995,

#	RetrogeneDB ID	Identity (%)	Coverage (%)	ORF conservation	Expression evidence	RDV
1.	retro_ptro_31	99.01	100.00	Please wait, loading	Please wait, loading	Please wait, loading

Download FASTA sequences of all ENSPTRG00000011298 retrocopies

Parental gene:	RPL13A, ENSPTRG00000011298
Aliases:	None
Description:	ribosomal protein L13a [Source:HGNC Symbol;Acc:10304]
Organism:	*Chimpanzee (Pan troglodytes)*
Coordinates:	19:54484737..54489425(+)

Parental gene:

RPL13A, ENSPTRG00000011298