RetrogeneDB ID: | retro_mmul_1638 | ||
Retrocopylocation | Organism: | Rhesus macaque (Macaca mulatta) | |
Coordinates: | 3:143238217..143238573(+) | ||
Located in intron of: | ENSMMUG00000000383 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | MMU.2512 | ||
Ensembl ID: | ENSMMUG00000007551 | ||
Aliases: | None | ||
Description: | ribosomal protein L13a [Source:RefSeq peptide;Acc:NP_001182348] |
Percent Identity: | 78.33 % |
Parental protein coverage: | 58.62 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | RGMLPHKTKRGQAALDRLKVFD-GIPPPYDKKKRMVVPAALKVVRLKHTRKFAYLGRLAHEVGWKYQAVT |
RGML...TKRG.AALD.LK.F..GIPPPYD.KKRMVVPAAL.V..LK.TRKFAY.G.LAHEVG.KYQAV. | |
Retrocopy | RGMLSLQTKRGRAALDPLKLFE<GIPPPYDNKKRMVVPAALEVMHLKPTRKFAYMGHLAHEVGCKYQAVA |
Parental | ATLEEKRKEKAKIHYRKKKQLMRLRKQAEKNVEKKIDKYTQVLKTHGLLV |
ATL.EKRKEKAKIHYRKKKQLMRL.KQ.EKNVEKK.DKYT...K.H.LLV | |
Retrocopy | ATLKEKRKEKAKIHYRKKKQLMRLWKQGEKNVEKKTDKYTEARKIHELLV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 89 .42 RPM |
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 247 .11 RPM |
SRP007412_cerebellum | 0 .06 RPM | 122 .30 RPM |
SRP007412_heart | 0 .00 RPM | 287 .48 RPM |
SRP007412_kidney | 0 .00 RPM | 220 .18 RPM |
SRP007412_liver | 0 .00 RPM | 266 .72 RPM |
SRP007412_testis | 0 .53 RPM | 123 .67 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_3772 |