RetrogeneDB ID: | retro_mmul_500 | ||
Retrocopylocation | Organism: | Rhesus macaque (Macaca mulatta) | |
Coordinates: | 1:65448183..65448725(-) | ||
Located in intron of: | ENSMMUG00000002340 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | MMU.2512 | ||
Ensembl ID: | ENSMMUG00000007551 | ||
Aliases: | None | ||
Description: | ribosomal protein L13a [Source:RefSeq peptide;Acc:NP_001182348] |
Percent Identity: | 72.97 % |
Parental protein coverage: | 90.64 % |
Number of stop codons detected: | 5 |
Number of frameshifts detected | 1 |
Parental | AAIVAKQVLLGRKVVVVRCEGINISGNFYRNKLKYLAFLRKRMNTNPSRGPYHFRAPSRIFWRTVRGMLP |
AAIVAKQVLL..KVV...CEGI.ISG.FYRN.LKYLAFL...MNTN...GPYHF..P...FW.T...MLP | |
Retrocopy | AAIVAKQVLLDWKVVIMCCEGIHISGSFYRNTLKYLAFLCR*MNTNSF*GPYHFQVPNCLFWWTM*SMLP |
Parental | HKTKRGQAALDRLKVFDGIPPPYDKKKRMVVPAALKVVRLKHTRKFAYLGRLAHEVGWKYQAVTATLEEK |
HKTK.GQAALD.LK.FDGIP..YDK.K.MV..AAL.VV.LK..RK.AYLG.LAH.VGWKYQAVTATLEEK | |
Retrocopy | HKTK*GQAALDHLKMFDGIPLHYDK-K*MV--AALNVVCLKPVRKVAYLGLLAHDVGWKYQAVTATLEEK |
Parental | RKEKAKIHYRKKKQLMRLRKQAE-KNVEKKIDKYTQVLKTHGLLV |
RKEKAKI.Y..K.QL.RL.KQAE.KN.E.KIDKY..VLKTHGLLV | |
Retrocopy | RKEKAKILYWRKRQLTRLQKQAE<KNMENKIDKYIEVLKTHGLLV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .11 RPM | 89 .42 RPM |
SRP007412_brain_prefrontal_cortex | 0 .16 RPM | 247 .11 RPM |
SRP007412_cerebellum | 0 .58 RPM | 122 .30 RPM |
SRP007412_heart | 0 .00 RPM | 287 .48 RPM |
SRP007412_kidney | 0 .00 RPM | 220 .18 RPM |
SRP007412_liver | 0 .24 RPM | 266 .72 RPM |
SRP007412_testis | 0 .04 RPM | 123 .67 RPM |