RetrogeneDB ID: | retro_mmul_924 | ||
Retrocopylocation | Organism: | Rhesus macaque (Macaca mulatta) | |
Coordinates: | 12:66383731..66384236(+) | ||
Located in intron of: | ENSMMUG00000009009 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | MMU.2512 | ||
Ensembl ID: | ENSMMUG00000007551 | ||
Aliases: | None | ||
Description: | ribosomal protein L13a [Source:RefSeq peptide;Acc:NP_001182348] |
Percent Identity: | 58.38 % |
Parental protein coverage: | 84.73 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 1 |
Parental | KVVVVRCEGINISGNFYRNKLKYLAFLRKRMNTNPSRGPYHFRAPSRIFWRTVRGMLPHKTKRGQAALDR |
KVVV...E.I.ISG.FYRNKLKYLAFL.K..NTN.S.GPYH...PS.IFW.T....LPH.TK.G.A.LD. | |
Retrocopy | KVVVIC*EDITISGSFYRNKLKYLAFLCKQTNTNLSQGPYHLWVPSHIFWQTTCSRLPHNTKQG*ASLDH |
Parental | LKVFDGIPPPYDKKKRMVVPAALKVVRLKHTRKFA-YLGRLAHEVGWKYQAVTATLEEKRKEKAKIHYRK |
.KVFDGIP.PYDKKK.M.V.A.L.V...K..RKFA.YLG..AH.V.WKYQ..TAT..E............ | |
Retrocopy | FKVFDGIPLPYDKKKQMAVSATLRVICPKPRRKFA>YLGHWAHKVDWKYQTMTATMREEKXXXXXXXXXX |
Parental | KKQLMRLRKQAEKNVEKKIDKYTQVLKTHGLLV |
.KQLMRL...AEKN..K....Y..VLK.H.LLV | |
Retrocopy | XKQLMRLWEKAEKNIDK----YMKVLKAHRLLV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .11 RPM | 89 .42 RPM |
SRP007412_brain_prefrontal_cortex | 0 .16 RPM | 247 .11 RPM |
SRP007412_cerebellum | 0 .19 RPM | 122 .30 RPM |
SRP007412_heart | 0 .18 RPM | 287 .48 RPM |
SRP007412_kidney | 0 .12 RPM | 220 .18 RPM |
SRP007412_liver | 0 .08 RPM | 266 .72 RPM |
SRP007412_testis | 0 .00 RPM | 123 .67 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_2200 |
Gorilla gorilla | retro_ggor_1739 |
Callithrix jacchus | retro_cjac_2755 |