RetrogeneDB ID: | retro_mmul_296 | ||
Retrocopylocation | Organism: | Rhesus macaque (Macaca mulatta) | |
Coordinates: | 17:16319743..16320346(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSMMUG00000030787 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | MMU.2512 | ||
Ensembl ID: | ENSMMUG00000007551 | ||
Aliases: | None | ||
Description: | ribosomal protein L13a [Source:RefSeq peptide;Acc:NP_001182348] |
Percent Identity: | 83.17 % |
Parental protein coverage: | 99.51 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | AEVQVLVLDGRGHLLGRLAAIVAKQVLLGRKVVVVRCEGINISGNFYRNKLKYLAFLRKRMNTNPSRGPY |
A.VQVL.LDG.GH.LGRLAAIVAKQVLLGRKVV...CEGINISG.FYRN.LKYLAFLRKRMNT....... | |
Retrocopy | AGVQVLELDGGGHFLGRLAAIVAKQVLLGRKVVILPCEGINISGSFYRNTLKYLAFLRKRMNTTRPQA-L |
Parental | HFRAPSRIFWRTVRGMLPHKTKRGQAALDRLKVFDGIPPPYDKKKRMVVPAALKVVRLKHTRKFAYLGRL |
...APSRIF.RTVRG.L.HK..RGQAAL.R..VFDGIP.PYDKKKRMVVPAALKVVRLK.TRKFAYLGRL | |
Retrocopy | RLPAPSRIFRRTVRGKLRHK--RGQAALGRRRVFDGIPLPYDKKKRMVVPAALKVVRLKPTRKFAYLGRL |
Parental | AHEVGWKYQAVTATLEEKRKEKAKIHYRKKKQLMRLRKQAEKNVEKKIDKYTQVLKTHGLLV |
A.EVGWKYQAVTATLEEKRKEKAKIHY..KKQL.RLRKQAEKNVEKKIDKYTQVLKTHG.LV | |
Retrocopy | AYEVGWKYQAVTATLEEKRKEKAKIHYQRKKQLRRLRKQAEKNVEKKIDKYTQVLKTHGPLV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 2 .69 RPM | 89 .42 RPM |
SRP007412_brain_prefrontal_cortex | 0 .16 RPM | 247 .11 RPM |
SRP007412_cerebellum | 3 .81 RPM | 122 .30 RPM |
SRP007412_heart | 4 .42 RPM | 287 .48 RPM |
SRP007412_kidney | 5 .87 RPM | 220 .18 RPM |
SRP007412_liver | 1 .23 RPM | 266 .72 RPM |
SRP007412_testis | 3 .20 RPM | 123 .67 RPM |