RetrogeneDB ID: | retro_mmul_1256 | ||
Retrocopylocation | Organism: | Rhesus macaque (Macaca mulatta) | |
Coordinates: | 16:30966324..30966934(-) | ||
Located in intron of: | ENSMMUG00000006048 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | MMU.2512 | ||
Ensembl ID: | ENSMMUG00000007551 | ||
Aliases: | None | ||
Description: | ribosomal protein L13a [Source:RefSeq peptide;Acc:NP_001182348] |
Percent Identity: | 91.67 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | MAEVQVLVLDGRGHLLGRLAAIVAKQVLLGRKVVVVRCEGINISGNFYRNKLKYLAFLRKRMNTNPSRGP |
MAEV.VLVLDG.GHLLGRLAAIVAKQVL.G.KVVVVRCEGINISGNFYRNKLKYLAFL.KRMNTNPSRGP | |
Retrocopy | MAEVPVLVLDGGGHLLGRLAAIVAKQVLRGWKVVVVRCEGINISGNFYRNKLKYLAFLCKRMNTNPSRGP |
Parental | YHFRAPSRIFWRTVRGMLPHKTKRGQAALDRLKVFDGIPPPYDKKKRMVVPAALKVVRL-KHTRKFAYLG |
YHFRAPS.IFWRT..GMLPHKTK.GQAALDRLKVFD.IPPPY.KKKRMVVPAALKVVRL...TRKFAYLG | |
Retrocopy | YHFRAPSSIFWRTAPGMLPHKTKQGQAALDRLKVFDRIPPPYNKKKRMVVPAALKVVRL>LPTRKFAYLG |
Parental | RLAHEVGWKYQAVTATLEEKRKEKAKIHYRKKKQLMRLRKQAEKNVEKKIDKYTQVLKTHGLLV |
RLAHEVGWKYQAVTATLEEKRKEKAKI.YRKKKQLMRLRKQAEKNVEKK.DKYT.VLKTHGLLV | |
Retrocopy | RLAHEVGWKYQAVTATLEEKRKEKAKIPYRKKKQLMRLRKQAEKNVEKKTDKYTEVLKTHGLLV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .22 RPM | 89 .42 RPM |
SRP007412_brain_prefrontal_cortex | 0 .08 RPM | 247 .11 RPM |
SRP007412_cerebellum | 0 .52 RPM | 122 .30 RPM |
SRP007412_heart | 0 .65 RPM | 287 .48 RPM |
SRP007412_kidney | 0 .23 RPM | 220 .18 RPM |
SRP007412_liver | 0 .51 RPM | 266 .72 RPM |
SRP007412_testis | 0 .45 RPM | 123 .67 RPM |