RetrogeneDB - Parental gene ENSCAFG00000028715 details

                            
>ENSCAFG00000028715
ATGGAAACTCTTCCTTTGAAGAATCCGAGGAAGCCTTTTGTCATTCGAATCAGGATGGCTAAAGGTGATCCCAAGAAACC

AAAGGGCAAGATGTCTGCTTATGCCTTCTTTGTGCAGACGTGCAGAGAGGAACATAAGAAGAAAAACCCGGAGGTTCCTG

TCAATTTTGCTGAGTTTTCCAAGAAGTGCTCTGAGAGGTGGAAGACAATGTCTGGAAAAGAGAAGTCGAAATTTGATGAA

ATGGCCAAGGCAGATAAAGTGCGCTATGATCGGGAAATGAAGGATTATGGACCCGCTAAGGGAGGCAAGAAGAAGAAGGA

CCCTAATGCCCCCAAAAGACCACCGTCTGGATTTTTCCTGTTCTGCTCGGAATTCCGCCCCAAGATCAAATCGACAAACC

CTGGAATCTCCATTGGAGATGTGGCGAAGAAGCTCGGTGAGATGTGGAATAACTTAAGTGACAGCGAGAAGCAGCCTTAC

AACAACAAGGCAGCCAAGCTGAAGGAGAAGTATGAGAAGGATGTCGCTGACTATAAGTCTAAAGGGAAGTTTGATGGCGC

AAAGGGTCCCGCTAAAGTTGCCCGGAAAAAGGTGGAAGAAGAAGATGAAGAAGACGAAGAGGAAGAAGAGGAGGAGGAGG

AGGAGGAGGAGGATGAATAA

Library	Parental gene expression (RPM)
SRP012049_cerebellum	32 .55 RPM
SRP017611_brain	13 .18 RPM
SRP017611_kidney	26 .22 RPM
SRP017611_liver	70 .56 RPM

Species	Parental gene accession	Homology type	Retrogenes number
Bos taurus	ENSBTAG00000005150	possible_ortholog	2 retrogenes	retro_btau_190, retro_btau_38,
Canis familiaris	ENSCAFG00000006597	other_paralog	13 retrogenes	retro_cfam_1088, retro_cfam_1102, retro_cfam_1387, retro_cfam_1628, retro_cfam_1765, retro_cfam_1831, retro_cfam_1980, retro_cfam_242, retro_cfam_280, retro_cfam_467, retro_cfam_495, retro_cfam_521, retro_cfam_528,
Choloepus hoffmanni	ENSCHOG00000005005	ortholog_one2one	2 retrogenes	retro_chof_1891, retro_chof_2010,
Callithrix jacchus	ENSCJAG00000003936	possible_ortholog	9 retrogenes	retro_cjac_1596, retro_cjac_1950, retro_cjac_2343, retro_cjac_2469, retro_cjac_2470, retro_cjac_2738, retro_cjac_2900, retro_cjac_688, retro_cjac_965,
Equus caballus	ENSECAG00000020596	ortholog_one2one	1 retrogene	retro_ecab_890,
Echinops telfairi	ENSETEG00000015689	possible_ortholog	4 retrogenes	retro_etel_104, retro_etel_1272, retro_etel_385, retro_etel_465,
Felis catus	ENSFCAG00000024624	ortholog_one2one	4 retrogenes	retro_fcat_1480, retro_fcat_1504, retro_fcat_265, retro_fcat_865,
Gorilla gorilla	ENSGGOG00000027164	possible_ortholog	16 retrogenes	retro_ggor_1371, retro_ggor_1538, retro_ggor_1540, retro_ggor_1651, retro_ggor_1834, retro_ggor_2104, retro_ggor_2250, retro_ggor_2469, retro_ggor_2490, retro_ggor_2580, retro_ggor_272, retro_ggor_2944, retro_ggor_301, retro_ggor_414, retro_ggor_549, retro_ggor_618,
Loxodonta africana	ENSLAFG00000025877	ortholog_one2one	1 retrogene	retro_lafr_893,
Microcebus murinus	ENSMICG00000015668	possible_ortholog	4 retrogenes	retro_mmur_564, retro_mmur_60, retro_mmur_853, retro_mmur_994,
Myotis lucifugus	ENSMLUG00000010926	ortholog_one2many	4 retrogenes	retro_mluc_1055, retro_mluc_1989, retro_mluc_215, retro_mluc_529,
Macaca mulatta	ENSMMUG00000004633	possible_ortholog	20 retrogenes	retro_mmul_1003, retro_mmul_1115, retro_mmul_1143, retro_mmul_1303, retro_mmul_1341, retro_mmul_1482, retro_mmul_1568, retro_mmul_1624, retro_mmul_1799, retro_mmul_1957, retro_mmul_2106, retro_mmul_2425, retro_mmul_2451, retro_mmul_2469, retro_mmul_2484, retro_mmul_2526, retro_mmul_267, retro_mmul_399, retro_mmul_514, retro_mmul_597,
Monodelphis domestica	ENSMODG00000005735	ortholog_one2one	7 retrogenes	retro_mdom_1257, retro_mdom_1508, retro_mdom_1883, retro_mdom_1952, retro_mdom_587, retro_mdom_698, retro_mdom_831,
Mustela putorius furo	ENSMPUG00000011606	ortholog_one2many	2 retrogenes	retro_mputfur_138, retro_mputfur_26,
Mus musculus	ENSMUSG00000015217	possible_ortholog	1 retrogene	retro_mmus_273,
Oryctolagus cuniculus	ENSOCUG00000005986	possible_ortholog	7 retrogenes	retro_ocun_1033, retro_ocun_1913, retro_ocun_1914, retro_ocun_534, retro_ocun_568, retro_ocun_891, retro_ocun_931,
Otolemur garnettii	ENSOGAG00000001773	possible_ortholog	19 retrogenes	retro_ogar_1318, retro_ogar_1647, retro_ogar_1728, retro_ogar_187, retro_ogar_1930, retro_ogar_204, retro_ogar_2076, retro_ogar_2530, retro_ogar_2591, retro_ogar_2678, retro_ogar_2743, retro_ogar_2983, retro_ogar_3127, retro_ogar_3371, retro_ogar_343, retro_ogar_3433, retro_ogar_3479, retro_ogar_3513, retro_ogar_65,
Procavia capensis	ENSPCAG00000001945	ortholog_one2one	1 retrogene	retro_pcap_328,
Pteropus vampyrus	ENSPVAG00000000219	ortholog_one2one	1 retrogene	retro_pvam_356,
Rattus norvegicus	ENSRNOG00000011096	possible_ortholog	4 retrogenes	retro_rnor_1049, retro_rnor_2303, retro_rnor_2359, retro_rnor_2363,
Rattus norvegicus	ENSRNOG00000050910	possible_ortholog	5 retrogenes	retro_rnor_1956, retro_rnor_2516, retro_rnor_2625, retro_rnor_720, retro_rnor_954,
Sarcophilus harrisii	ENSSHAG00000002916	ortholog_one2one	2 retrogenes	retro_shar_139, retro_shar_316,
Sus scrofa	ENSSSCG00000012745	possible_ortholog	3 retrogenes	retro_sscr_1094, retro_sscr_466, retro_sscr_467,
Ictidomys tridecemlineatus	ENSSTOG00000023908	possible_ortholog	6 retrogenes	retro_itri_1366, retro_itri_1527, retro_itri_1655, retro_itri_1749, retro_itri_777, retro_itri_909,

#	RetrogeneDB ID	Identity (%)	Coverage (%)	ORF conservation	Expression evidence	RDV
1.	retro_cfam_1537	87.08	80.82	Please wait, loading	Please wait, loading	Please wait, loading

Download FASTA sequences of all ENSCAFG00000028715 retrocopies

Parental gene:	HMGB3, ENSCAFG00000028715
Aliases:	None
Description:	high mobility group box 3 [Source:HGNC Symbol;Acc:5004]
Organism:	*Dog (Canis familiaris)*
Coordinates:	X:119151721..119161866(+)

Parental gene:

HMGB3, ENSCAFG00000028715