RetrogeneDB ID: | retro_cfam_1537 | ||
Retrocopylocation | Organism: | Dog (Canis familiaris) | |
Coordinates: | 33:29350878..29351407(-) | ||
Located in intron of: | ENSCAFG00000012955 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | HMGB3 | ||
Ensembl ID: | ENSCAFG00000028715 | ||
Aliases: | None | ||
Description: | high mobility group box 3 [Source:HGNC Symbol;Acc:5004] |
Percent Identity: | 87.08 % |
Parental protein coverage: | 80.82 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | TCREEHKKK-NPEVPVNFAEFSKKCSERWKTMSGKEKSKFDEMAKADKVRYDREMKDYGPAKGGKKKKDP |
T....HKKK.NPEVPVNFAEFSKKCS.RWKT.SGKEKSKFDEMAKADKVRYDREMKDYGPAKGGKKKKDP | |
Retrocopy | TLKKKHKKK>NPEVPVNFAEFSKKCSKRWKTTSGKEKSKFDEMAKADKVRYDREMKDYGPAKGGKKKKDP |
Parental | NAPKRPPSGFFLFCSEFRPKIKSTNPGISIGDVAKKLGEMWNNLSDSEKQPYNNKAAKLKEKYEKDVADY |
NAPKRPPSGFFLFCSE.RPK.KSTNPGISIG.VAKKLG...NNLSDSEKQPY.NKAAKLKEKYEKDVADY | |
Retrocopy | NAPKRPPSGFFLFCSESRPKSKSTNPGISIGVVAKKLGRCGNNLSDSEKQPY-NKAAKLKEKYEKDVADY |
Parental | KSKGKFDGAKGPAKVARKKVEEEDEEDEEEEEEEEEEE |
KSKGKFDGAKGPAKVARKKVEE..E..EEE.EEE.... | |
Retrocopy | KSKGKFDGAKGPAKVARKKVEEDEEDKEEEKEEEDDDD |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012049_cerebellum | 0 .08 RPM | 32 .55 RPM |
SRP017611_brain | 0 .00 RPM | 13 .18 RPM |
SRP017611_kidney | 0 .00 RPM | 26 .22 RPM |
SRP017611_liver | 0 .00 RPM | 70 .56 RPM |