RetrogeneDB ID: | retro_pabe_3832 | ||
Retrocopylocation | Organism: | Orangutan (Pongo abelii) | |
Coordinates: | X_random:9113785..9114310(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | ARL5A | ||
Ensembl ID: | ENSPPYG00000012848 | ||
Aliases: | None | ||
Description: | ADP-ribosylation factor-like 5A [Source:HGNC Symbol;Acc:696] |
Percent Identity: | 85. % |
Parental protein coverage: | 98.88 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 3 |
Parental | ILFTRIWRLFNHQEHKVIIVGLDNAGKTTI-LYQFSMNEVVHTSPTIGSNVEEIVVNNTRFLMWDIGGQE |
ILFTRIWRLFNHQE.KVIIV.LDN.GKTTI.L.QFS.NEVVHTSP..GSNVEEI..NNT.FL.WDIGGQE | |
Retrocopy | ILFTRIWRLFNHQEYKVIIVKLDNSGKTTI<L*QFSTNEVVHTSPVVGSNVEEILINNTHFLIWDIGGQE |
Parental | SLRSSWNTY-YTNTEFVIVVVDSTD-RERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEIS |
SLRSSWNTY.Y.NTEFVI.VV..T..RERISV.REELYKMLAHEDLRK..LLIFANKQDVKECMTVAEIS | |
Retrocopy | SLRSSWNTY<YINTEFVI-VVVDTT<RERISVIREELYKMLAHEDLRKGALLIFANKQDVKECMTVAEIS |
Parental | QFLKLTSIKDHQWHIQACCALTGEGLCQGLEWMMSRLKIR |
QFLKLTSIKDHQWH....CALTGEGLCQGLEWMMSRL.IR | |
Retrocopy | QFLKLTSIKDHQWHTHEGCALTGEGLCQGLEWMMSRLQIR |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 4 .98 RPM |
SRP007412_cerebellum | 0 .00 RPM | 7 .30 RPM |
SRP007412_heart | 0 .00 RPM | 5 .27 RPM |
SRP007412_kidney | 0 .00 RPM | 5 .04 RPM |
SRP007412_liver | 0 .03 RPM | 4 .25 RPM |