RetrogeneDB ID: | retro_mmul_641 | ||
Retrocopylocation | Organism: | Rhesus macaque (Macaca mulatta) | |
Coordinates: | 10:67504574..67504886(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | MMU.9075 | ||
Ensembl ID: | ENSMMUG00000010521 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 85.85 % |
Parental protein coverage: | 59.22 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | MGILFTRIWRLFNHQEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEEIVINNTRFLMWDIGGQ |
M.I.FTR.WRLF.HQEHKV.IVGLDNAGKTTILYQFSMNEVVHTSP..GS.VEE.VINNT.FL.WDIGGQ | |
Retrocopy | MRIFFTRTWRLFHHQEHKVFIVGLDNAGKTTILYQFSMNEVVHTSPARGSHVEELVINNTHFLTWDIGGQ |
Parental | ESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREEL |
ES.RSS.NTYYTNTEFVIVVVDST..ERISVTREEL | |
Retrocopy | ESRRSS*NTYYTNTEFVIVVVDST--ERISVTREEL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 13 .45 RPM |
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 7 .46 RPM |
SRP007412_cerebellum | 0 .00 RPM | 25 .05 RPM |
SRP007412_heart | 0 .00 RPM | 11 .89 RPM |
SRP007412_kidney | 0 .00 RPM | 10 .21 RPM |
SRP007412_liver | 0 .00 RPM | 4 .67 RPM |
SRP007412_testis | 0 .04 RPM | 1 .77 RPM |