Parental gene:

ARL5A, ENSG00000162980

Aliases:None
Description:ADP-ribosylation factor-like 5A [Source:HGNC Symbol;Acc:696]
Organism:Human (Homo sapiens)
Coordinates:2:152645497..152685006(-)


>ENSG00000162980
ATGGGAATTCTCTTCACTAGAATATGGAGACTGTTCAATCACCAGGAGCACAAAGTTATCATTGTTGGGCTGGATAATGC
AGGGAAAACTACCATTCTTTACCAATTTTCTATGAATGAAGTTGTACATACATCTCCTACAATAGGAAGTAATGTAGAAG
AGATAGTGATTAATAATACACGTTTCCTAATGTGGGATATTGGTGGCCAAGAATCTCTTCGTTCTTCCTGGAACACTTAC
TATACTAACACAGAGTTTGTAATAGTTGTTGTGGACAGTACAGACAGAGAGAGGATTTCTGTAACTAGAGAAGAACTCTA
TAAAATGTTAGCGCATGAGGACCTAAGAAAAGCTGGATTGCTGATTTTTGCTAATAAACAAGATGTTAAAGAATGCATGA
CTGTAGCAGAAATCTCCCAGTTTTTGAAGCTAACTTCTATTAAAGATCACCAGTGGCATATCCAGGCATGCTGTGCTCTA
ACTGGCGAGGGATTGTGCCAAGGACTTGAATGGATGATGTCACGACTTAAGATTAGATGA

Library Parental gene expression (RPM)
bodymap2_liver 40 .73 RPM
bodymap2_lung 80 .52 RPM
bodymap2_breast 76 .73 RPM
bodymap2_adipose 86 .51 RPM
bodymap2_adrenal 72 .97 RPM
bodymap2_skeletal_muscle 91 .96 RPM
bodymap2_thyroid 116 .17 RPM
bodymap2_prostate 90 .67 RPM
bodymap2_colon 85 .04 RPM
bodymap2_testis 62 .16 RPM
bodymap2_brain 83 .05 RPM
bodymap2_heart 108 .14 RPM
bodymap2_white_blood_cells 111 .26 RPM
bodymap2_lymph_node 71 .40 RPM
bodymap2_ovary 75 .37 RPM
bodymap2_kidney 74 .86 RPM



Species Parental gene accession Homology type Retrogenes number
Choloepus hoffmanni ENSCHOG00000005062 ortholog_one2one 25 retrogenes
retro_chof_1109, retro_chof_1132, retro_chof_1205, retro_chof_1218, retro_chof_1407, retro_chof_1414, retro_chof_1443, retro_chof_1573, retro_chof_1712, retro_chof_1953, retro_chof_206, retro_chof_2081, retro_chof_2131, retro_chof_2142, retro_chof_2433, retro_chof_2464, retro_chof_2470, retro_chof_2713, retro_chof_373, retro_chof_547, retro_chof_836, retro_chof_857, retro_chof_865, retro_chof_972, retro_chof_98,
Callithrix jacchus ENSCJAG00000003311 ortholog_one2many 9 retrogenes
retro_cjac_1054, retro_cjac_1111, retro_cjac_1255, retro_cjac_1921, retro_cjac_2949, retro_cjac_3920, retro_cjac_4131, retro_cjac_4175, retro_cjac_4211,
Cavia porcellus ENSCPOG00000005209 ortholog_one2one 1 retrogene
retro_cpor_913,
Dasypus novemcinctus ENSDNOG00000013331 ortholog_one2one 16 retrogenes
retro_dnov_105, retro_dnov_1165, retro_dnov_1244, retro_dnov_1953, retro_dnov_2159, retro_dnov_226, retro_dnov_2265, retro_dnov_2268, retro_dnov_2344, retro_dnov_2394, retro_dnov_563, retro_dnov_671, retro_dnov_713, retro_dnov_811, retro_dnov_818, retro_dnov_881,
Felis catus ENSFCAG00000014742 possible_ortholog 2 retrogenes
retro_fcat_569, retro_fcat_65,
Loxodonta africana ENSLAFG00000032104 ortholog_one2one 4 retrogenes
retro_lafr_1178, retro_lafr_1228, retro_lafr_1244, retro_lafr_599,
Microcebus murinus ENSMICG00000015788 ortholog_one2one 7 retrogenes
retro_mmur_1271, retro_mmur_1487, retro_mmur_1586, retro_mmur_1618, retro_mmur_468, retro_mmur_652, retro_mmur_923,
Macaca mulatta ENSMMUG00000010521 ortholog_one2one 5 retrogenes
retro_mmul_2519, retro_mmul_2543, retro_mmul_2630, retro_mmul_616, retro_mmul_641,
Monodelphis domestica ENSMODG00000003978 ortholog_one2many 1 retrogene
retro_mdom_75,
Mus musculus ENSMUSG00000036093 ortholog_one2one 1 retrogene
retro_mmus_2232,
Nomascus leucogenys ENSNLEG00000011191 ortholog_one2one 2 retrogenes
retro_nleu_1259, retro_nleu_2280,
Otolemur garnettii ENSOGAG00000011424 ortholog_one2one 6 retrogenes
retro_ogar_1879, retro_ogar_2112, retro_ogar_2675, retro_ogar_3146, retro_ogar_3465, retro_ogar_728,
Pongo abelii ENSPPYG00000012848 ortholog_one2one 4 retrogenes
retro_pabe_3711, retro_pabe_3806, retro_pabe_3832, retro_pabe_621,
Pan troglodytes ENSPTRG00000012538 ortholog_one2one 5 retrogenes
retro_ptro_1486, retro_ptro_3134, retro_ptro_3175, retro_ptro_3262, retro_ptro_514,
Ictidomys tridecemlineatus ENSSTOG00000016326 possible_ortholog 1 retrogene
retro_itri_62,
Tupaia belangeri ENSTBEG00000011511 ortholog_one2one 8 retrogenes
retro_tbel_1173, retro_tbel_1540, retro_tbel_3202, retro_tbel_3464, retro_tbel_3681, retro_tbel_3835, retro_tbel_4207, retro_tbel_4665,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_hsap_721 89.92 83.10
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2. retro_hsap_2549 81.98 94.97
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3. retro_hsap_4715 86.67 98.88
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4. retro_hsap_4768 57.94 69.27
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5. retro_hsap_4894 82.39 78.21
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Download FASTA sequences of all ENSG00000162980 retrocopies