RetrogeneDB ID: | retro_mmul_2519 | ||
Retrocopylocation | Organism: | Rhesus macaque (Macaca mulatta) | |
Coordinates: | X:93353305..93353605(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | MMU.9075 | ||
Ensembl ID: | ENSMMUG00000010521 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 85. % |
Parental protein coverage: | 55.87 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 0 |
Parental | YYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQFLKLTSIKD |
Y.....FVIV.VDSTDRERISVTREELYKMLAHE.LRKAGLL.FAN.QDVKECMTV...SQFLKLTSIKD | |
Retrocopy | YHPLPIFVIVAVDSTDRERISVTREELYKMLAHEGLRKAGLLTFANEQDVKECMTVG*FSQFLKLTSIKD |
Parental | HQWHIQACCALTGEGLCQGLEWMMSRLKIR |
HQWHIQACCALTGEGL.QGLE.MMS.LKIR | |
Retrocopy | HQWHIQACCALTGEGLWQGLE*MMS*LKIR |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 13 .45 RPM |
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 7 .46 RPM |
SRP007412_cerebellum | 0 .00 RPM | 25 .05 RPM |
SRP007412_heart | 0 .00 RPM | 11 .89 RPM |
SRP007412_kidney | 0 .00 RPM | 10 .21 RPM |
SRP007412_liver | 0 .00 RPM | 4 .67 RPM |
SRP007412_testis | 0 .00 RPM | 1 .77 RPM |