RetrogeneDB ID: | retro_vpac_13 | ||
Retrocopylocation | Organism: | Alpaca (Vicugna pacos) | |
Coordinates: | GeneScaffold_1281:135107..135683(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSVPAG00000005307 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | CDC42 | ||
Ensembl ID: | ENSVPAG00000006919 | ||
Aliases: | None | ||
Description: | cell division cycle 42 [Source:HGNC Symbol;Acc:1736] |
Percent Identity: | 59.47 % |
Parental protein coverage: | 99.48 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPL |
MQ.IKCVVVGDGAVGKTCLLI.YTTN.FP.EY.PTVFDNY.......G....L.L.DTAGQE.YDRLR.L | |
Retrocopy | MQSIKCVVVGDGAVGKTCLLICYTTNAFPKEYIPTVFDNYSAQSAVDGRTVNLNLWDTAGQEEYDRLRTL |
Parental | SYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPE |
SYPQT.VF..CFS..SP.S.ENV..KW.PE..HHCP..P.LLVGT..DLR..P.T...L....Q.PITP. | |
Retrocopy | SYPQTNVFVICFSIASPPSYENVRHKWHPEVCHHCPDVPILLVGTKKDLRSQPDTLRRLKEQGQAPITPQ |
Parental | TAEKLARDLKAVKYVECSALTQRGLKNVFDEAILAALEPPETQPKRKCCI |
....LA....AV.Y.ECSAL.Q.G.K.VF.EA..A.L.P......R.C.. | |
Retrocopy | QGQALAKQIHAVRYLECSALQQDGVKEVFAEAVRAVLNPTPVKRGRSCVL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Canis familiaris | ENSCAFG00000014707 | 5 retrocopies | |
Choloepus hoffmanni | ENSCHOG00000005306 | 10 retrocopies | |
Callithrix jacchus | ENSCJAG00000005912 | 6 retrocopies | |
Cavia porcellus | ENSCPOG00000006543 | 4 retrocopies | |
Echinops telfairi | ENSETEG00000004443 | 1 retrocopy | |
Felis catus | ENSFCAG00000004853 | 4 retrocopies | |
Macaca mulatta | ENSMMUG00000022009 | 8 retrocopies | |
Monodelphis domestica | ENSMODG00000016078 | 3 retrocopies | |
Mustela putorius furo | ENSMPUG00000015999 | 2 retrocopies | |
Nomascus leucogenys | ENSNLEG00000008198 | 4 retrocopies | |
Oryctolagus cuniculus | ENSOCUG00000009986 | 1 retrocopy | |
Sorex araneus | ENSSARG00000005184 | 3 retrocopies | |
Ictidomys tridecemlineatus | ENSSTOG00000000805 | 4 retrocopies | |
Vicugna pacos | ENSVPAG00000004859 | 2 retrocopies | |
Vicugna pacos | ENSVPAG00000006919 | 3 retrocopies |
retro_vpac_13 , retro_vpac_451, retro_vpac_542,
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