RetrogeneDB ID: | retro_vpac_451 | ||
Retrocopylocation | Organism: | Alpaca (Vicugna pacos) | |
Coordinates: | scaffold_206495:387..680(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | CDC42 | ||
Ensembl ID: | ENSVPAG00000006919 | ||
Aliases: | None | ||
Description: | cell division cycle 42 [Source:HGNC Symbol;Acc:1736] |
Percent Identity: | 54.55 % |
Parental protein coverage: | 51.31 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | TDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNK-QKPITPETAE |
TDVFL.CFS...P..FEN....W.PE..HHCP.TP..LVG.....RD..ST.EKL...K...PIT..... | |
Retrocopy | TDVFLICFSLPGPATFENGYADWYPEV*HHCPNTPIILVGMKPEFRDAKSTTEKLKEKK<TNPITYPQGS |
Parental | KLARDLKAVKYVECSALTQRGLKNVFDEA |
..A....AVKY.E.SAL.QRGLK.VFDEA | |
Retrocopy | AVAKEIGAVKYLEGSALMQRGLKTVFDEA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Canis familiaris | ENSCAFG00000014707 | 5 retrocopies | |
Choloepus hoffmanni | ENSCHOG00000005306 | 10 retrocopies | |
Callithrix jacchus | ENSCJAG00000005912 | 6 retrocopies | |
Cavia porcellus | ENSCPOG00000006543 | 4 retrocopies | |
Echinops telfairi | ENSETEG00000004443 | 1 retrocopy | |
Felis catus | ENSFCAG00000004853 | 4 retrocopies | |
Macaca mulatta | ENSMMUG00000022009 | 8 retrocopies | |
Monodelphis domestica | ENSMODG00000016078 | 3 retrocopies | |
Mustela putorius furo | ENSMPUG00000015999 | 2 retrocopies | |
Nomascus leucogenys | ENSNLEG00000008198 | 4 retrocopies | |
Oryctolagus cuniculus | ENSOCUG00000009986 | 1 retrocopy | |
Sorex araneus | ENSSARG00000005184 | 3 retrocopies | |
Ictidomys tridecemlineatus | ENSSTOG00000000805 | 4 retrocopies | |
Vicugna pacos | ENSVPAG00000004859 | 2 retrocopies | |
Vicugna pacos | ENSVPAG00000006919 | 3 retrocopies |
retro_vpac_13, retro_vpac_451 , retro_vpac_542,
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