RetrogeneDB ID: | retro_vpac_560 | ||
Retrocopylocation | Organism: | Alpaca (Vicugna pacos) | |
Coordinates: | scaffold_45716:3620..4032(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | PTP4A1 | ||
Ensembl ID: | ENSVPAG00000004277 | ||
Aliases: | None | ||
Description: | protein tyrosine phosphatase type IVA, member 1 [Source:HGNC Symbol;Acc:9634] |
Percent Identity: | 82.86 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | ELKKYGVTTIVRVCEATYDTTLVEKEGIHVLDW-PFDDGAPPSNQIVDDWLSLVKIKFREDPGCCIAVHC |
ELKKYGVTTIVRV.EATY.TT.VEK.GI.VLD..PFDDGAPPSNQIVDDWLSLVKIKF.ED.GCCIA.HC | |
Retrocopy | ELKKYGVTTIVRVYEATYNTTFVEKKGIRVLDC<PFDDGAPPSNQIVDDWLSLVKIKFPEDFGCCIAAHC |
Parental | VAGLGRAPVLVALALIEGGMKYEDAVQFIRQKRRGAFNSKQLLYLEKYRPK-MRLRFKDSNGHRNNCCIQ |
VAGLGR.PVLVALALIEGGMKYEDA.QF.RQK..GAFNSK..L.LEKY.PK...L.FKDSNG.RNNCCIQ | |
Retrocopy | VAGLGRVPVLVALALIEGGMKYEDAFQFTRQKWHGAFNSK*ILFLEKYHPK<KQLHFKDSNGQRNNCCIQ |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |