RetrogeneDB ID: | retro_vpac_427 | ||
Retrocopylocation | Organism: | Alpaca (Vicugna pacos) | |
Coordinates: | scaffold_180334:175..462(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | PTP4A1 | ||
Ensembl ID: | ENSVPAG00000004277 | ||
Aliases: | None | ||
Description: | protein tyrosine phosphatase type IVA, member 1 [Source:HGNC Symbol;Acc:9634] |
Percent Identity: | 72.16 % |
Parental protein coverage: | 69.57 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 1 |
Parental | ELKKYG-VTTIVRVCEATYDTTLVEKEGIHVLDWPFDDGAPPSNQIVDDWLSLVKIKFREDPGCCIAVHC |
.LKKYG..T.IVRVCEA.YD..L.EKEGIHVLDWPFD.GA.P.NQIVDD..SL.KIKF.E.P..C.AVHC | |
Retrocopy | KLKKYG<ITIIVRVCEAIYDIALKEKEGIHVLDWPFDEGALPFNQIVDD**SLRKIKFYEEPCHCTAVHC |
Parental | VAGLGRAPVLVALALIEGGMKYEDAVQ |
VA.LGRAP.L.ALALIEGGMK.....Q | |
Retrocopy | VASLGRAPKLAALALIEGGMKHRKQKQ |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |