RetrogeneDB ID: | retro_cfam_1832 | ||
Retrocopylocation | Organism: | Dog (Canis familiaris) | |
Coordinates: | 6:69599599..69599914(-) | ||
Located in intron of: | ENSCAFG00000029643 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | PTP4A1 | ||
Ensembl ID: | ENSCAFG00000002490 | ||
Aliases: | None | ||
Description: | protein tyrosine phosphatase type IVA, member 1 [Source:HGNC Symbol;Acc:9634] |
Percent Identity: | 61.47 % |
Parental protein coverage: | 61.85 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | TYKNMRFLITHNPTNATLNK-FIEELKKYGVTTI-VRVCEATYDTTLVEKEGIHVLDWPFDDGAPPSNQI |
.YKN..FLI..NPTN.TLNK.F.E.L...G.TT..VR..EA.YDT.L.EKEGI.VL..PFD....P.N.I | |
Retrocopy | SYKNI-FLIIPNPTNKTLNK>FTEKLEQHGHTTM<VRIYEAMYDTALMEKEGILVLEQPFDE-LSPFN*I |
Parental | VDDWLSLVKIKFREEPGCCIAVHCVAGLGRAPVLVALAL |
.D..LSL.KIKF.EEPGCC.A.HCVAG.GR.PVL..L.. | |
Retrocopy | TDNTLSLAKIKFCEEPGCCAAIHCVAGHGRGPVLACLRM |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012049_cerebellum | 0 .00 RPM | 26 .59 RPM |
SRP017611_brain | 0 .00 RPM | 21 .28 RPM |
SRP017611_kidney | 0 .00 RPM | 25 .69 RPM |
SRP017611_liver | 0 .00 RPM | 41 .84 RPM |
Species | RetrogeneDB ID |
---|---|
Equus caballus | retro_ecab_869 |