Parental gene:

PTP4A1, ENSCPOG00000025759

Aliases:None
Description:None
Organism:Guinea Pig (Cavia porcellus)
Coordinates:scaffold_0:82587918..82590483(-)


>ENSCPOG00000025759
ATGGCTCGAATGAACCGCCCAGCTCCTGTGGAAGTCACATACAAGAGCATGAGATTCCTCATCACACACAACCCAACCAA
TGCAACCTTAAACAAGTTTATAGAGGAACTTAAGAAGTATGGAGTTACCACAATAGTAAGAGTATGTGAAGCAACGTATG
ACACTACTCTTGTGGAGAAAGAAGGCATTCATGTTTTTGATTGGCCTTTTGATGATGGTGCGCCACCGTCCAACCAGATT
GTTGATGACTGGTTAAATCTTGTAAAAATTAAGTTTCGTGAAGAACCCGGTTGTTGTATTGCTGTCCATTGTGTCGCAGG
CCTTGGGAGAGCTCCAGTGCTTGTTGCCCTAGCATTAATTGAAGGTGGAATGAAGTATGAAGATGCAGTACAGTTCATAA
GACAAAAGCGGCGCGGAGCTTTTAACAGCAAGCAGCTTTTATATCTGGAGAAGTATCGTCCTAAAATGCGGCTGCGCTTC
AAAGACTCCAATGGTCACAGGAATAACTGTTGCATGCAA

Library Parental gene expression (RPM)
SRP017611_brain 27 .44 RPM
SRP017611_kidney 23 .45 RPM
SRP017611_liver 21 .28 RPM
SRP040447_lung 27 .29 RPM
SRP040447_skeletal_muscle 37 .03 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000002275 ortholog_one2one 3 retrogenes
retro_btau_1051, retro_btau_1186, retro_btau_859,
Echinops telfairi ENSETEG00000008183 ortholog_one2one 6 retrogenes
retro_etel_1485, retro_etel_1681, retro_etel_1698, retro_etel_18, retro_etel_2153, retro_etel_668,
Latimeria chalumnae ENSLACG00000007183 ortholog_one2many 1 retrogene
retro_lcha_90,
Loxodonta africana ENSLAFG00000006572 ortholog_one2one 8 retrogenes
retro_lafr_1054, retro_lafr_1120, retro_lafr_1133, retro_lafr_328, retro_lafr_670, retro_lafr_7, retro_lafr_780, retro_lafr_939,
Myotis lucifugus ENSMLUG00000001162 ortholog_one2many 1 retrogene
retro_mluc_264,
Macaca mulatta ENSMMUG00000002777 possible_ortholog 1 retrogene
retro_mmul_1720,
Monodelphis domestica ENSMODG00000018701 ortholog_one2many 5 retrogenes
retro_mdom_1630, retro_mdom_1864, retro_mdom_363, retro_mdom_729, retro_mdom_927,
Nomascus leucogenys ENSNLEG00000000440 ortholog_one2one 6 retrogenes
retro_nleu_1111, retro_nleu_1159, retro_nleu_1681, retro_nleu_169, retro_nleu_407, retro_nleu_893,
Oryctolagus cuniculus ENSOCUG00000006311 possible_ortholog 4 retrogenes
retro_ocun_225, retro_ocun_226, retro_ocun_24, retro_ocun_26,
Ochotona princeps ENSOPRG00000004938 possible_ortholog 4 retrogenes
retro_opri_246, retro_opri_511, retro_opri_692, retro_opri_973,
Pongo abelii ENSPPYG00000016743 ortholog_one2one 5 retrogenes
retro_pabe_2058, retro_pabe_255, retro_pabe_2660, retro_pabe_3732, retro_pabe_721,
Rattus norvegicus ENSRNOG00000011771 possible_ortholog 4 retrogenes
retro_rnor_1591, retro_rnor_2798, retro_rnor_494, retro_rnor_827,
Rattus norvegicus ENSRNOG00000046370 possible_ortholog 4 retrogenes
retro_rnor_2349, retro_rnor_2868, retro_rnor_612, retro_rnor_971,
Tupaia belangeri ENSTBEG00000009956 possible_ortholog 14 retrogenes
retro_tbel_1216, retro_tbel_1392, retro_tbel_2167, retro_tbel_2236, retro_tbel_23, retro_tbel_2549, retro_tbel_2570, retro_tbel_2611, retro_tbel_3144, retro_tbel_3295, retro_tbel_3424, retro_tbel_4074, retro_tbel_4123, retro_tbel_869,
Tursiops truncatus ENSTTRG00000004129 ortholog_one2one 6 retrogenes
retro_ttru_34, retro_ttru_450, retro_ttru_571, retro_ttru_642, retro_ttru_643, retro_ttru_69,
Vicugna pacos ENSVPAG00000004277 possible_ortholog 9 retrogenes
retro_vpac_167, retro_vpac_201, retro_vpac_275, retro_vpac_427, retro_vpac_476, retro_vpac_496, retro_vpac_535, retro_vpac_560, retro_vpac_583,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cpor_58 83.24 100.00
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2. retro_cpor_552 62.69 75.72
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3. retro_cpor_1137 55.37 69.36
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4. retro_cpor_1233 55.45 57.23
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5. retro_cpor_1392 59.30 96.53
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Download FASTA sequences of all ENSCPOG00000025759 retrocopies