RetrogeneDB ID: | retro_vpac_476 | ||
Retrocopylocation | Organism: | Alpaca (Vicugna pacos) | |
Coordinates: | scaffold_23522:5..308(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | PTP4A1 | ||
Ensembl ID: | ENSVPAG00000004277 | ||
Aliases: | None | ||
Description: | protein tyrosine phosphatase type IVA, member 1 [Source:HGNC Symbol;Acc:9634] |
Percent Identity: | 89.11 % |
Parental protein coverage: | 73.19 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | VCEATYDTTLVEKEGIHVLDWPFDDGAPPSNQIVDDWLSLVKIKFREDPGCCIAVHCVAGLGRAPVLVAL |
.CEATYDT.LVEKEGI.VLDWPFDDG..PSNQIVDDWLSLV.IKFRE.PGCCIAVHCVAGLGR.PVLVAL | |
Retrocopy | LCEATYDTALVEKEGIQVLDWPFDDGSSPSNQIVDDWLSLVNIKFREEPGCCIAVHCVAGLGRTPVLVAL |
Parental | ALIEGGMKYEDAVQFIRQKRRGAFNSKQLLY |
ALIEGGMK.EDAVQ..RQKRRGAFNSKQLLY | |
Retrocopy | ALIEGGMKNEDAVQYVRQKRRGAFNSKQLLY |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |