RetrogeneDB ID: | retro_cfam_593 | ||
Retrocopylocation | Organism: | Dog (Canis familiaris) | |
Coordinates: | 14:16910310..16910680(+) | ||
Located in intron of: | ENSCAFG00000001898 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | PTP4A1 | ||
Ensembl ID: | ENSCAFG00000002490 | ||
Aliases: | None | ||
Description: | protein tyrosine phosphatase type IVA, member 1 [Source:HGNC Symbol;Acc:9634] |
Percent Identity: | 69.05 % |
Parental protein coverage: | 71.68 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 2 |
Parental | NPTNATLNKFIEELKKYGVTTIVRVCEATYDTTLVEKEGIHVLDWPFDDGAPPSNQIVDDWLSLVKIKFR |
N.T..TLNKF.E.LKKYG.T.IVR.CEATY.T.LV.KE.I.VLD.PFD.GA.PS.Q.VDD.L.LVKIKF. | |
Retrocopy | NLTSVTLNKFKEGLKKYGITIIVRICEATYHTALVLKENIWVLD*PFDGGALPSSQSVDD*LCLVKIKFL |
Parental | EEPGCCIAV-HCVAGLGRAPVLVALALIEGGMKYEDAV-QFIRQKRRGAFNSKQLL |
EE.GCCI.V.H.VAGLGRA...V.LALIEGGM.Y.DA...F.RQK...AF.SKQLL | |
Retrocopy | EESGCCITV<HLVAGLGRALMHVVLALIEGGMRYKDAE<KFVRQKWS*AFKSKQLL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012049_cerebellum | 0 .00 RPM | 26 .59 RPM |
SRP017611_brain | 0 .00 RPM | 21 .28 RPM |
SRP017611_kidney | 0 .00 RPM | 25 .69 RPM |
SRP017611_liver | 0 .00 RPM | 41 .84 RPM |
Species | RetrogeneDB ID |
---|---|
Macaca mulatta | retro_mmul_1720 |
Equus caballus | retro_ecab_783 |