RetrogeneDB ID: | retro_mmus_3259 | ||
Retrocopylocation | Organism: | Mouse (Mus musculus) | |
Coordinates: | 9:31783157..31783700(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Rpl7 | ||
Ensembl ID: | ENSMUSG00000043716 | ||
Aliases: | Rpl7, Rpl7a, Surf-3 | ||
Description: | ribosomal protein L7 [Source:MGI Symbol;Acc:MGI:98073] |
Percent Identity: | 77.54 % |
Parental protein coverage: | 69.26 % |
Number of stop codons detected: | 4 |
Number of frameshifts detected | 0 |
Parental | RQMYRTEIRMARMARKAGNFYVPAEPKLAFVIRIRGINGVSPKVRKVLQLLRLRQIFNGTFVKLNKASIN |
R.MYRTEIRMARMAR.AGNFYVPAEPKLAFVIRIR...G......KV...L...QIFNGTFVKLNKASIN | |
Retrocopy | R*MYRTEIRMARMAREAGNFYVPAEPKLAFVIRIR---GINGVSPKVRKVL---QIFNGTFVKLNKASIN |
Parental | MLRIVEPYIAWGYPNLKSVNELIYKRGYGKINKKRIALTDNSLIARSLGKFGIICMEDLIHEIYTVGKRF |
ML.IVEPYI..GYPNLKSVN..IYKRGY.KINKK.IA.TDNSLI.R.LGKFGI.CMEDL...IY.VGK.. | |
Retrocopy | MLWIVEPYIT*GYPNLKSVNKPIYKRGYDKINKKQIASTDNSLITRPLGKFGIVCMEDLGYAIYAVGKGV |
Parental | KEANNFLWPFKLSSPRGGMKKKTTHFVEGGDAGNREDQINRLIRRMN |
.EANNFL.PFK.SSPRGGM.KKTTHFVEGGDAGNRED.INRL.R..N | |
Retrocopy | NEANNFL*PFKFSSPRGGM*KKTTHFVEGGDAGNREDEINRLSRQIN |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .02 RPM | 108 .26 RPM |
SRP007412_cerebellum | 0 .00 RPM | 87 .10 RPM |
SRP007412_heart | 0 .00 RPM | 118 .08 RPM |
SRP007412_kidney | 0 .02 RPM | 156 .36 RPM |
SRP007412_liver | 0 .00 RPM | 136 .76 RPM |
SRP007412_testis | 0 .00 RPM | 77 .30 RPM |