RetrogeneDB ID: | retro_rnor_2028 | ||
Retrocopylocation | Organism: | Rat (Rattus norvegicus) | |
Coordinates: | 4:2864791..2865461(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Rpl7 | ||
Ensembl ID: | ENSRNOG00000006992 | ||
Aliases: | None | ||
Description: | 60S ribosomal protein L7 [Source:RefSeq peptide;Acc:NP_001094004] |
Percent Identity: | 86.78 % |
Parental protein coverage: | 86.54 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | EAVPEKKKKVAAAPGTLKKKKVP-AVPETLKKKRRNFAELKVKRLRKKFALKTLRKARRKLIYEKAKHYH |
EAVPEK.KKVAAAP.T.K.KKVP.A.PETL.KKRRNFAELKV.RLRKKFALKTLRKARRKLIYEKAKH.H | |
Retrocopy | EAVPEKEKKVAAAPETFK-KKVP<AEPETLEKKRRNFAELKVRRLRKKFALKTLRKARRKLIYEKAKHSH |
Parental | KEYRQMYRTEIRMARMARKAGNFYVPAEPKLAFVIRIRGINGVSPKVRKVLQLLRLRQIFNGTFVKLNKA |
KEYRQM..TEIRMARM.RKAGN...PAEPKLAFVIRIRGINGV.PKVRKVLQLL.LRQIF.GTFVKLNK. | |
Retrocopy | KEYRQMNWTEIRMARMSRKAGNACAPAEPKLAFVIRIRGINGVNPKVRKVLQLLCLRQIFKGTFVKLNKT |
Parental | SVNM-LRIVEPYIAWGYPNLKSVNELIYKRGYGKINKKRIALTDNSLVARSLGKFGIICMEDLIHEIYTV |
SVNM..RIVEPYIAWGYPNLK..NELIYK.GYGKINKK.IALT.NSL.ARSLGK.GIICMEDLI.EIYTV | |
Retrocopy | SVNM<VRIVEPYIAWGYPNLKPINELIYK*GYGKINKKQIALTHNSLIARSLGKLGIICMEDLILEIYTV |
Parental | GKRFKEANNFLWPFKLS |
GK.FKEANNFLWPFKLS | |
Retrocopy | GKLFKEANNFLWPFKLS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 134 .59 RPM |
SRP017611_kidney | 0 .00 RPM | 304 .39 RPM |
SRP017611_liver | 0 .07 RPM | 183 .42 RPM |