RetrogeneDB ID: | retro_btau_879 | ||
Retrocopylocation | Organism: | Cow (Bos taurus) | |
Coordinates: | 2:91685399..91686142(-) | ||
Located in intron of: | ENSBTAG00000016000 | ||
Retrocopyinformation | Ensembl ID: | ENSBTAG00000019994 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL7 | ||
Ensembl ID: | ENSBTAG00000020139 | ||
Aliases: | None | ||
Description: | 60S ribosomal protein L7 [Source:UniProtKB/Swiss-Prot;Acc:Q58DT1] |
Percent Identity: | 98.8 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | MEGAEEKKKKVPAVPETLKKKRKNFAELKIKRLRKKFAQKMLRKARRKLIYEKAKHYHKEYRQMYRTEIR |
MEGAEEKKKKVPAVPETLKKKRKNFAELKIKRLRKKFAQKMLRKARRKLIYEKAKHYHKEYRQMYRTEIR | |
Retrocopy | MEGAEEKKKKVPAVPETLKKKRKNFAELKIKRLRKKFAQKMLRKARRKLIYEKAKHYHKEYRQMYRTEIR |
Parental | MARMARKAGNFYVPAEPKLAFVIRIRGINGVSPKVRKVLQLLRLRQIFNGTFVKLNKASINMLRIVEPYI |
MA.MARKAGNFYVPAEPKLAFVIRIRGINGVSPKVRKVLQLLRLRQIFNGTFVKLNKASINMLRIVEPYI | |
Retrocopy | MAKMARKAGNFYVPAEPKLAFVIRIRGINGVSPKVRKVLQLLRLRQIFNGTFVKLNKASINMLRIVEPYI |
Parental | AWGY-PNLKSVNELIYKRGYGKINKKRIALTDNALIARSLGKYGIICMEDLIHEIYTVGKRFKEANNFLW |
AWGY.PNLKSVNELIYKRGYGKINKKRIALTDN.LIARSLGKYGIICMEDLIHEIYTVGKRFKEANNFLW | |
Retrocopy | AWGY<PNLKSVNELIYKRGYGKINKKRIALTDNTLIARSLGKYGIICMEDLIHEIYTVGKRFKEANNFLW |
Parental | PFKLSSPRGGMKKKTTHFVEGGDAGNREDQINRLIRRMN |
PFKLSSPRGGMKKKTTHFVEGGDAGNREDQINRLIRRMN | |
Retrocopy | PFKLSSPRGGMKKKTTHFVEGGDAGNREDQINRLIRRMN |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
ERP005899_liver | 1 .51 RPM | 178 .37 RPM |
ERP005899_muscle | 1 .06 RPM | 1258 .39 RPM |
SRP017611_brain | 0 .23 RPM | 104 .47 RPM |
SRP017611_kidney | 0 .30 RPM | 269 .03 RPM |
SRP017611_liver | 0 .15 RPM | 138 .03 RPM |
SRP030211_testis | 0 .23 RPM | 222 .08 RPM |