RetrogeneDB ID: | retro_btau_863 | ||
Retrocopylocation | Organism: | Cow (Bos taurus) | |
Coordinates: | 2:35200688..35201108(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL7 | ||
Ensembl ID: | ENSBTAG00000020139 | ||
Aliases: | None | ||
Description: | 60S ribosomal protein L7 [Source:UniProtKB/Swiss-Prot;Acc:Q58DT1] |
Percent Identity: | 93.57 % |
Parental protein coverage: | 56.45 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MEGAEEKKKKVPAVPETLKKKRKNFAELKIKRLRKKFAQKMLRKARRKLIYEKAKHYHKEYRQMYRTEIR |
M.GAEEKKKKV.A.PETLKKKRKNF.ELKIKRLRKKFAQKMLRKARRKLIYEKAKHYHKEYRQMYRTEIR | |
Retrocopy | MVGAEEKKKKVSALPETLKKKRKNFTELKIKRLRKKFAQKMLRKARRKLIYEKAKHYHKEYRQMYRTEIR |
Parental | MARMARKAGNFYVPAEPKLAFVIRIRGINGVSPKVRKVLQLLRLRQIFNGTFVKLNKASINMLRIVEPYI |
MARMARKAGN.Y.PAEPKLAFVIRIRGINGVSPKVRKVLQLLRLRQIFN.TFVKLN.ASINMLRIVEPY. | |
Retrocopy | MARMARKAGNVYEPAEPKLAFVIRIRGINGVSPKVRKVLQLLRLRQIFNCTFVKLNRASINMLRIVEPYV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
ERP005899_liver | 0 .00 RPM | 178 .37 RPM |
ERP005899_muscle | 0 .32 RPM | 1258 .39 RPM |
SRP017611_brain | 0 .00 RPM | 104 .47 RPM |
SRP017611_kidney | 0 .06 RPM | 269 .03 RPM |
SRP017611_liver | 0 .00 RPM | 138 .03 RPM |
SRP030211_testis | 0 .01 RPM | 222 .08 RPM |