RetrogeneDB ID: | retro_tsyr_953 | ||
Retrocopylocation | Organism: | Tarsier (Tarsius syrichta) | |
Coordinates: | scaffold_25327:3551..4265(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL7 | ||
Ensembl ID: | ENSTSYG00000006100 | ||
Aliases: | None | ||
Description: | ribosomal protein L7 [Source:HGNC Symbol;Acc:10363] |
Percent Identity: | 75. % |
Parental protein coverage: | 97.19 % |
Number of stop codons detected: | 5 |
Number of frameshifts detected | 2 |
Parental | EKKKKVPAVPETLKKKRRNFAELKLKRLRKKAQKMLRKARRKLIY-EKAKHYHKEYRQMYRTEIRMARMA |
EKKKK.PAVPETLKKK.RNF.ELK...L.K...KML..ARRKLIY..KAKHY.K.YRQMYRTEI.MARMA | |
Retrocopy | EKKKKFPAVPETLKKK*RNFTELKIRHLKKFVPKMLQ*ARRKLIY>KKAKHYRKGYRQMYRTEI*MARMA |
Parental | RKAGNFYVPAEPKLAFVIRIRGINGVSPKVRKVLQLLRLRQIFNGTFVKLNKASINMLRIVEPYIAWGYP |
RKAGNFY.P.EPK.AF.IRIRGIN.V.PKV.K.LQL.RL.QIFN.TF.KLN..SINMLR.VEPYI.WGY. | |
Retrocopy | RKAGNFYGPPEPKSAFIIRIRGINSVIPKVQKALQL-RLCQIFNRTFFKLNQTSINMLRMVEPYITWGYL |
Parental | NLKSVNELIYKRGYGKINKKRIALTDNSLIARSLGKYGIICMEDLIHEIYTVGKRFKEANNFLWPFKLSS |
NLKSVNELIYK.GY.KINKK.IALT...LI..SL.KYGIICMEDLI.EIY.VGK.FKE..NFL.P.KLSS | |
Retrocopy | NLKSVNELIYKCGYEKINKKQIALTESGLIVQSLDKYGIICMEDLIQEIYIVGKCFKETHNFL*PLKLSS |
Parental | PRGGMKKKT-THFVEGGDAGNREDQINRLIRRMN |
...GMKK.T.TH.VE.GDAGNRE.QINRLI...N | |
Retrocopy | ---GMKKIT<THIVEDGDAGNRENQINRLIT*IN |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |