RetrogeneDB ID: | retro_rnor_2814 | ||
Retrocopylocation | Organism: | Rat (Rattus norvegicus) | |
Coordinates: | X:69283811..69284519(+) | ||
Located in intron of: | ENSRNOG00000026573 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Rpl7 | ||
Ensembl ID: | ENSRNOG00000006992 | ||
Aliases: | None | ||
Description: | 60S ribosomal protein L7 [Source:RefSeq peptide;Acc:NP_001094004] |
Percent Identity: | 84.77 % |
Parental protein coverage: | 92.31 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 3 |
Parental | KKKKVPAVPETLKK-KRRNF-AELKVKRLRKKFALKTLRKARRKLIYEKAKHYHKEYRQMYRTEIRMARM |
KK.K..A.P.TLKK.K...F..EL.VKRLRKKFALKTLRKARRKLI.EKAKHYHKE.RQ.YRTEI.MAR. | |
Retrocopy | KKNKAAATPGTLKK<KAKEF<SELRVKRLRKKFALKTLRKARRKLI*EKAKHYHKECRQTYRTEIHMART |
Parental | ARKAGNFYVPAEPKLAFVIRIRGINGVSPKVRKVLQLLRLRQIFNGTFVKLNKASVNMLRIVEPYIAWG- |
AR.AGN.Y.PAEPKLAFVIR...INGVSPKVRKVLQLLRLRQI..GTFVKL.KASVNM.RIVEPY.AWG. | |
Retrocopy | ARRAGNSYAPAEPKLAFVIR---INGVSPKVRKVLQLLRLRQILHGTFVKLSKASVNMRRIVEPYLAWG< |
Parental | YPNLKSVNELIYKRGYGKINKKRIALTDNSLVARSLGKFGIICMEDLIHEIYTVGKRFKEANNFLWPFKL |
YP.LKSVNELIYKRGYGKINKKRIALTD.SL.A..LGKFGIICMEDLIHEIYTVGKRFKEANNFLWPFKL | |
Retrocopy | YPSLKSVNELIYKRGYGKINKKRIALTDHSLTALPLGKFGIICMEDLIHEIYTVGKRFKEANNFLWPFKL |
Parental | SSPRGGMKKKTTHFVEGGDAGNREDQINRLIRR |
SSP.GGMKKKTTH.VEGGDAGNRE.QINRLIRR | |
Retrocopy | SSPPGGMKKKTTHSVEGGDAGNREGQINRLIRR |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 134 .59 RPM |
SRP017611_kidney | 0 .00 RPM | 304 .39 RPM |
SRP017611_liver | 0 .07 RPM | 183 .42 RPM |