RetrogeneDB ID: | retro_btau_1088 | ||
Retrocopylocation | Organism: | Cow (Bos taurus) | |
Coordinates: | 25:19930431..19931172(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL7 | ||
Ensembl ID: | ENSBTAG00000020139 | ||
Aliases: | None | ||
Description: | 60S ribosomal protein L7 [Source:UniProtKB/Swiss-Prot;Acc:Q58DT1] |
Percent Identity: | 91.94 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 4 |
Number of frameshifts detected | 0 |
Parental | MEGAEEKKKKVPAVPETLKKKRKNFAELKIKRLRKKFAQKMLRKARRKLIYEKAKHYHKEYRQMYRTEIR |
MEGAEEKKKKVPAVPETLKKKRKNF.ELKIK.LRKKFAQKML.KARRKLIYEKAKHYHKEYRQMYRTEI. | |
Retrocopy | MEGAEEKKKKVPAVPETLKKKRKNFVELKIKCLRKKFAQKML*KARRKLIYEKAKHYHKEYRQMYRTEIQ |
Parental | MARMARKAGNFYVPAEPKLAFVIRIRGINGVSPKVRKVLQLLRLRQIFNGTFVKLNKASINMLRIVEPYI |
MARMARKAGNFYVPAEPKLAFVIRIRGINGVSPKV.KVLQLL.LRQIFNGTFVKLNKASINMLRIVEPYI | |
Retrocopy | MARMARKAGNFYVPAEPKLAFVIRIRGINGVSPKV*KVLQLLCLRQIFNGTFVKLNKASINMLRIVEPYI |
Parental | AWGYPNLKSVNELIYKRGYGKINKKRIALTDNALIARSLGKYGIICMEDLIHEIYTVGKRFKEANNFLWP |
.WGYPNLKSVNELIYKRGYGK.NKK..ALT.NALIARSLGKYGIIC..DLIHEIYTVGKRFK.ANNFL.P | |
Retrocopy | TWGYPNLKSVNELIYKRGYGKMNKK*TALTYNALIARSLGKYGIICTQDLIHEIYTVGKRFKAANNFLRP |
Parental | FKLSSPRGGMKKKTTHFVEGGDAGNREDQINRLIRRMN |
FKLSSP..GM.KKTTHFVEGGDAGNREDQI.RLI.RMN | |
Retrocopy | FKLSSP*RGM-KKTTHFVEGGDAGNREDQIKRLIGRMN |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
ERP005899_liver | 0 .00 RPM | 178 .37 RPM |
ERP005899_muscle | 0 .26 RPM | 1258 .39 RPM |
SRP017611_brain | 0 .00 RPM | 104 .47 RPM |
SRP017611_kidney | 0 .12 RPM | 269 .03 RPM |
SRP017611_liver | 0 .00 RPM | 138 .03 RPM |
SRP030211_testis | 0 .23 RPM | 222 .08 RPM |