RetrogeneDB ID: | retro_btau_758 | ||
Retrocopylocation | Organism: | Cow (Bos taurus) | |
Coordinates: | 19:29352213..29352956(+) | ||
Located in intron of: | ENSBTAG00000017815 | ||
Retrocopyinformation | Ensembl ID: | ENSBTAG00000006397 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL7 | ||
Ensembl ID: | ENSBTAG00000020139 | ||
Aliases: | None | ||
Description: | 60S ribosomal protein L7 [Source:UniProtKB/Swiss-Prot;Acc:Q58DT1] |
Percent Identity: | 94.78 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | MEGAEEKKKKVPAVPETLKKKRKNFAELKIKRLRKKFAQKMLRKARRKLIYEKAKHYHKEYRQMYRTEIR |
MEGAEEKKKKVPAVPETLKKK.KNFAELKIKRLRKK.AQKMLRKARRKLIYEKAKHYHKEYRQMYRTEIR | |
Retrocopy | MEGAEEKKKKVPAVPETLKKKWKNFAELKIKRLRKKSAQKMLRKARRKLIYEKAKHYHKEYRQMYRTEIR |
Parental | MARMARKAGNFYVPAEPKLAFVIRIRGING-VSPKVRKVLQLLRLRQIFNGTFVKLNKASINMLRIVEPY |
MARMARKAGNFYVP.EPKLAFVIRIRG.NG..SPK..KVL.LLRLRQIF.GT.VKLNKASINMLRIVEPY | |
Retrocopy | MARMARKAGNFYVPSEPKLAFVIRIRGTNG<LSPKA*KVLRLLRLRQIFSGTSVKLNKASINMLRIVEPY |
Parental | IAWGYPNLKSVNELIYKRGYGKINKKRIALTDNALIARSLGKYGIICMEDLIHEIYTVGKRFKEANNFLW |
IAWGYPNLKSVNELIYKRGYGKINKKR.ALTDNALIARSLGKYGIICMEDLIHEIYTVGKRFKEANNFLW | |
Retrocopy | IAWGYPNLKSVNELIYKRGYGKINKKRTALTDNALIARSLGKYGIICMEDLIHEIYTVGKRFKEANNFLW |
Parental | PFKLSSPRGGMKKKTTHFVEGGDAGNREDQINRLIRRMN |
PFKLSSPRGGMKK.TTHFVEGGDAGNREDQINRLIRRMN | |
Retrocopy | PFKLSSPRGGMKKETTHFVEGGDAGNREDQINRLIRRMN |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
ERP005899_liver | 6 .27 RPM | 178 .37 RPM |
ERP005899_muscle | 0 .79 RPM | 1258 .39 RPM |
SRP017611_brain | 0 .00 RPM | 104 .47 RPM |
SRP017611_kidney | 0 .83 RPM | 269 .03 RPM |
SRP017611_liver | 2 .04 RPM | 138 .03 RPM |
SRP030211_testis | 0 .50 RPM | 222 .08 RPM |