RetrogeneDB ID:

retro_ogar_225

Retrocopy
location
Organism:Bushbaby (Otolemur garnettii)
Coordinates:GL873523.1:36923861..36924605(+)
Located in intron of:None
Retrocopy
information
Ensembl ID:ENSOGAG00000030962
Aliases:None
Status:KNOWN_PROTEIN_CODING
Parental gene
information
Parental gene summary:
Parental gene symbol:None
Ensembl ID:ENSOGAG00000003903
Aliases:None
Description:None


Retrocopy-Parental alignment summary:






>retro_ogar_225
ATGGAGGGTGTTGAAGAGAAGAAAAAGGTTCCTGCTGTGCCAGAAACCCTTAAGAAAAAGAGAAAGAATTTCGCAGAGTT
GAAGATAAACCATCTGAGAAAGAAGTGTGCCCAAAAGATGCTTCGAAAGGCAAGGAGGAAGCTTATCTATGAAAAAGCTC
AGCATTATCGTAAAGAATACAGGCAGATGTACAGAACTGAGATTTGGATGGCTGGGATGGAAGGAAAAGCTGGCACCTTC
TATGTACCTGCAGAACCCGAATTGGCATTTGTCCTCAGGATCAGAGGGATCCATGGTGTGAGTCCAAAGGTCCGAAAGGT
GTTGCAGCTTCTTCGTCTTCGCCAGATCTTCAATGGAACTTTTGTTCAGCTCAACAAGGCTTCCATTAACATGCCGAGGA
TTGTAGAACCGTATGTTGCAAGGGGGTACCCAAATCTGAAGTCAGTAAATGAACTACTCTACAAGTGTGGTTATGGCAGA
ATCAATAAGAAACAAATTGCATTGACTGATAACAGTTTGATTGCACAATGTCTTGGTAAATATGGCATCATCTGCATGGA
GGATCTGATTCATGAGATCTATACTGTTGGAAAACGCTTCAAAGAAGCAAACAACTTCCTGTGGCCATTCAAGTTATCAT
CTCCAAGGGGTGGTATGAAGAAAAGGACAACCCACTTTGTAGAAGGTGAAGATGCTGGTAACAGGGAAGACCAAATCAAT
AGGCTTATTAGAAGAATGAACTAA

ORF - retro_ogar_225 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 89.71 %
Parental protein coverage: 97.98 %
Number of stop codons detected: 0
Number of frameshifts detected 0


Retrocopy - Parental Gene Alignment:

ParentalEKKKKVPAVPETLKKKRKNFAELKIKRLRKKCAQKMLRKARRKLIYEKAKHYHKEYRQMYRTEIRMARMA
E.KKKVPAVPETLKKKRKNFAELKI..LRKKCAQKMLRKARRKLIYEKA.HY.KEYRQMYRTEI.MA.M.
RetrocopyEEKKKVPAVPETLKKKRKNFAELKINHLRKKCAQKMLRKARRKLIYEKAQHYRKEYRQMYRTEIWMAGME
ParentalRKAGNFYVPAEPKLAFVIRIRGINGVSPKVRKVLQLLRLRQIFNGTFVKLNKASINMLRIVEPYIAWGYP
.KAG.FYVPAEP.LAFV.RIRGI.GVSPKVRKVLQLLRLRQIFNGTFV.LNKASINM.RIVEPY.A.GYP
RetrocopyGKAGTFYVPAEPELAFVLRIRGIHGVSPKVRKVLQLLRLRQIFNGTFVQLNKASINMPRIVEPYVARGYP
ParentalNLKSVNELIYKRGYGKINKKRIALTDNSLIARSLGKYGIICMEDLIHEIYTVGKRFKEANNFLWPFKLSS
NLKSVNEL.YK.GYG.INKK.IALTDNSLIA..LGKYGIICMEDLIHEIYTVGKRFKEANNFLWPFKLSS
RetrocopyNLKSVNELLYKCGYGRINKKQIALTDNSLIAQCLGKYGIICMEDLIHEIYTVGKRFKEANNFLWPFKLSS
ParentalPRGGMKKKTTHFVEGGDAGNREDQINRLIRRMN
PRGGMKK.TTHFVEG.DAGNREDQINRLIRRMN
RetrocopyPRGGMKKRTTHFVEGEDAGNREDQINRLIRRMN

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Otolemur garnettii was not studied using RNA-Seq expression data.
Otolemur garnettii was not studied using ChIP-Seq data.
Otolemur garnettii was not studied using EST data.
Otolemur garnettii was not studied using FANTOM5 data.
retro_ogar_225 was not experimentally validated.

Retrocopy orthology:
Otolemur garnettii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 19 parental genes, and 256 retrocopies.

Species Parental gene accession Retrocopies number
Bos taurus ENSBTAG0000002013922 retrocopies
Callithrix jacchus ENSCJAG000000076861 retrocopy
Equus caballus ENSECAG000000091881 retrocopy
Homo sapiens ENSG0000014760449 retrocopies
Latimeria chalumnae ENSLACG000000035711 retrocopy
Macropus eugenii ENSMEUG000000163199 retrocopies
Microcebus murinus ENSMICG000000028808 retrocopies
Myotis lucifugus ENSMLUG000000285503 retrocopies
Macaca mulatta ENSMMUG000000051411 retrocopy
Monodelphis domestica ENSMODG000000071364 retrocopies
Mus musculus ENSMUSG0000004371615 retrocopies
Otolemur garnettii ENSOGAG00000003903 2 retrocopies
retro_ogar_15, retro_ogar_225 ,
Otolemur garnettii ENSOGAG000000126713 retrocopies
Pongo abelii ENSPPYG0000001867150 retrocopies
Rattus norvegicus ENSRNOG0000000699227 retrocopies
Ictidomys tridecemlineatus ENSSTOG0000000458618 retrocopies
Tupaia belangeri ENSTBEG000000023011 retrocopy
Tarsius syrichta ENSTSYG0000000610025 retrocopies
Tursiops truncatus ENSTTRG0000000907416 retrocopies



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