RetrogeneDB ID: | retro_mmus_3440 | ||
Retrocopylocation | Organism: | Mouse (Mus musculus) | |
Coordinates: | X:36668468..36669013(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSMUSG00000081281 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Rpl7 | ||
Ensembl ID: | ENSMUSG00000043716 | ||
Aliases: | Rpl7, Rpl7a, Surf-3 | ||
Description: | ribosomal protein L7 [Source:MGI Symbol;Acc:MGI:98073] |
Percent Identity: | 95.63 % |
Parental protein coverage: | 67.41 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | TEIRMARMARKAGNFYVPAEPKLAFVIRIRGINGVSPKVRKVLQLL-RLRQIFNGTFVKLNKASINMLRI |
TEIRMARMARKAGNFYVPAEPK.AFVIRIRGINGVSPKV.KVLQLL.RLRQIFNGTFVKLNKASINML.I | |
Retrocopy | TEIRMARMARKAGNFYVPAEPKVAFVIRIRGINGVSPKVPKVLQLL<RLRQIFNGTFVKLNKASINMLQI |
Parental | VEPYIAWGYPNLKSVNELIYKRGYGKINKKRIALTDNSLIARSLGKFGIICMEDLIHEIYTVGKRFKEAN |
VEPYIAWGYPNLKSVNELIYKRGYGKINKKRIALTDNSLIARSLGKFGIICMEDLIHEIYTVGK.FKEAN | |
Retrocopy | VEPYIAWGYPNLKSVNELIYKRGYGKINKKRIALTDNSLIARSLGKFGIICMEDLIHEIYTVGKCFKEAN |
Parental | NFLWPFKLSSPRGGMKKKTTHFVEGGDAGNREDQINRLIRRMN |
NFLWPFKLSSPRGGMKKKTT.FVEGGDAGN.EDQIN.LIRRMN | |
Retrocopy | NFLWPFKLSSPRGGMKKKTTRFVEGGDAGNKEDQINSLIRRMN |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .02 RPM | 108 .26 RPM |
SRP007412_cerebellum | 0 .00 RPM | 87 .10 RPM |
SRP007412_heart | 0 .00 RPM | 118 .08 RPM |
SRP007412_kidney | 0 .13 RPM | 156 .36 RPM |
SRP007412_liver | 0 .03 RPM | 136 .76 RPM |
SRP007412_testis | 0 .05 RPM | 77 .30 RPM |