RetrogeneDB ID: | retro_rnor_1466 | ||
Retrocopylocation | Organism: | Rat (Rattus norvegicus) | |
Coordinates: | 19:59612209..59612621(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Rpl7 | ||
Ensembl ID: | ENSRNOG00000006992 | ||
Aliases: | None | ||
Description: | 60S ribosomal protein L7 [Source:RefSeq peptide;Acc:NP_001094004] |
Percent Identity: | 77.46 % |
Parental protein coverage: | 52.69 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 4 |
Parental | KKKKVPAV-PETLKK-KRRNFAELKVKRLRKKFALKTLRKARRKLIYEKAKHYHKEYRQMYRTEIRMARM |
KKK.V.A..P.TLKK.K.RNF.ELKVKR.RKKFALKTLRKARRKLIYEKAKHYHKEYRQMY.TEI.MA.M | |
Retrocopy | KKKMVDAA<PGTLKK<KQRNFTELKVKRPRKKFALKTLRKARRKLIYEKAKHYHKEYRQMYWTEIHMAWM |
Parental | ARKAGNFYVP-AEPKLAFVIRIRGINGVS-PK-VRKVLQLLRLRQIFNGTFVKLNKASVNMLRIVEPYIA |
ARKAGNFYVP..EPKLAFVIR...INGVS.PK.V..V......RQI.NGTFVKL.KASVN.LR.VEP.IA | |
Retrocopy | ARKAGNFYVP>TEPKLAFVIRLQVINGVS<PKGVQGVAVASSSRQILNGTFVKLSKASVNTLRTVEPHIA |
Parental | WG |
WG | |
Retrocopy | WG |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 134 .59 RPM |
SRP017611_kidney | 0 .00 RPM | 304 .39 RPM |
SRP017611_liver | 0 .00 RPM | 183 .42 RPM |