RetrogeneDB ID: | retro_rnor_2531 | ||
Retrocopylocation | Organism: | Rat (Rattus norvegicus) | |
Coordinates: | 7:95426167..95426886(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSRNOG00000004324 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Rpl7 | ||
Ensembl ID: | ENSRNOG00000006992 | ||
Aliases: | None | ||
Description: | 60S ribosomal protein L7 [Source:RefSeq peptide;Acc:NP_001094004] |
Percent Identity: | 85.06 % |
Parental protein coverage: | 91.92 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | KKKKVPAVPETLKKKRRNFAELKVKRLRKKFALKTLRKARRKLIYEKAKHYHKEYRQMYRTEIRMARMAR |
KKKK..A.P.TLKK..RNFAELKV.RLRKKFALKTLRKARRKLIYEKAKHYH.E.RQ..RTEIRMARMAR | |
Retrocopy | KKKKAVAAPGTLKKRQRNFAELKVRRLRKKFALKTLRKARRKLIYEKAKHYHEECRQTDRTEIRMARMAR |
Parental | KAGNFYVPAEPKLAFVIRIRGINGVSPKVRKVLQ-LLRLRQIFNGTFVKLNKASVNMLRIVEPYIAWGYP |
.AGN..VP.EP.LAFVIRIRG..GVSP.VRK.LQ.LLRLRQI..GTFVKL.KASVNMLR.VEP.IAWGYP | |
Retrocopy | RAGNVCVPEEPTLAFVIRIRGTSGVSPRVRKALQLLLRLRQILHGTFVKLSKASVNMLRTVEPHIAWGYP |
Parental | NLKSVNELIYKRGYGKINKKRIALTDNS-LVARSLGKFGIICMEDLIHEIYTVGKRFKEANNFLWPFKLS |
NLKSVNEL.YKRG.GKINKK..ALTDNS.L..RSLGKF.IICMEDLIH.IY.VGKRFKEANNFLWPFKLS | |
Retrocopy | NLKSVNELTYKRGSGKINKKHVALTDNS<LIVRSLGKFDIICMEDLIHVIYIVGKRFKEANNFLWPFKLS |
Parental | SPRGGMKKKTTHFVEGGDAGNREDQINRLIR |
SPRGGMKKKTTHFVEGGDAGNREDQINRLIR | |
Retrocopy | SPRGGMKKKTTHFVEGGDAGNREDQINRLIR |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .79 RPM | 134 .59 RPM |
SRP017611_kidney | 0 .21 RPM | 304 .39 RPM |
SRP017611_liver | 0 .13 RPM | 183 .42 RPM |