RetrogeneDB ID: | retro_rnor_530 | ||
Retrocopylocation | Organism: | Rat (Rattus norvegicus) | |
Coordinates: | 1:229944357..229945129(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Rpl7 | ||
Ensembl ID: | ENSRNOG00000006992 | ||
Aliases: | None | ||
Description: | 60S ribosomal protein L7 [Source:RefSeq peptide;Acc:NP_001094004] |
Percent Identity: | 82.51 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 4 |
Number of frameshifts detected | 2 |
Parental | MEAVPEKKKKVAAAPGTLKKKKVPAVPETLKKKRRNFAELKVKRLRKKFALKTLRKARRKLIYEKAKHYH |
ME.VPEKKK..AA.PGTLK.K.VPA..ETLKKK.RNF..LKVK.LRKKFALKTL.KARRKLIYEKAKHYH | |
Retrocopy | METVPEKKKRAAAVPGTLKQK-VPAELETLKKKSRNFEVLKVKHLRKKFALKTLQKARRKLIYEKAKHYH |
Parental | KEYRQMYRTEIRMARMARKAGNFYVPAEPKLAFVIRIRGIN-GVSPKVRKVLQLLRLRQIFNGTFVKLNK |
KEYRQMY.TEI.MARMARKA.NFYVPAEPKLAFVIRI.GI......KV.KVLQLLRLRQI.N.TFVKLNK | |
Retrocopy | KEYRQMYWTEIHMARMARKAENFYVPAEPKLAFVIRI*GISVELAQKVHKVLQLLRLRQILNSTFVKLNK |
Parental | ASVNMLRIVEPYIAWGYPNLKSVNELIYKRGYGKINKKRIALTDNSLVARSLGKFGIICMEDLIHEIYT- |
AS.NMLR.VEPYIAWGYPNLKSVNELIYK.G.GKINKK.IALTDNSL.A.SLGKFGIICMEDLI..IYT. | |
Retrocopy | ASINMLRTVEPYIAWGYPNLKSVNELIYK*GSGKINKKQIALTDNSLIA*SLGKFGIICMEDLI--IYT< |
Parental | VGKRFKE-ANNFLWPFKLSSPRGGMKKKTTHFVEGGDAGNREDQINRLIRRMN |
.G...K..ANNFLWPFKLSSP.GGMKKKTTHFVEGG..GNREDQINRLIR.MN | |
Retrocopy | LGQASKK<ANNFLWPFKLSSP*GGMKKKTTHFVEGGNVGNREDQINRLIRQMN |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 134 .59 RPM |
SRP017611_kidney | 0 .00 RPM | 304 .39 RPM |
SRP017611_liver | 0 .00 RPM | 183 .42 RPM |