RetrogeneDB ID: | retro_rnor_977 | ||
Retrocopylocation | Organism: | Rat (Rattus norvegicus) | |
Coordinates: | 13:91839814..91840375(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Rpl7 | ||
Ensembl ID: | ENSRNOG00000006992 | ||
Aliases: | None | ||
Description: | 60S ribosomal protein L7 [Source:RefSeq peptide;Acc:NP_001094004] |
Percent Identity: | 82.35 % |
Parental protein coverage: | 71.92 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 0 |
Parental | RQMYRTEIRMARMARKAGNFYVPAEPKLAFVIRIRGINGVSPKVRKVLQLLRLRQIFNGTFVKLNKASVN |
R...RTEIRMAR.ARKAGN.YV.AE.KLAFVIRI.GI.GVSPKV.KVLQLL.LRQIFNGTFVKLNKASVN | |
Retrocopy | RSTVRTEIRMARVARKAGNLYVLAETKLAFVIRIQGIGGVSPKV*KVLQLLSLRQIFNGTFVKLNKASVN |
Parental | MLRIVEPYIAWGYPNLKSVNELIYKRGYGKINKKRIALTDNSLVARSLGKFGIICMEDLIHEIYTVGKRF |
MLRIVE.YIAW..PNLKSVN..IYKRG.GKINKK.IALTDNSL.ARSLGKFGIICMEDLI.EIYTVGK.. | |
Retrocopy | MLRIVELYIAWANPNLKSVNDIIYKRGSGKINKKHIALTDNSLIARSLGKFGIICMEDLIREIYTVGKCL |
Parental | KEANNFLWPFKLSSPRGGMKKKTTHFVEGGDAGNREDQINRLIRRMN |
KEANNFLW.F.LSS..GGMKKKT.H.VEGGD..NR.DQINRLIR.M. | |
Retrocopy | KEANNFLWLFQLSSL*GGMKKKTIHLVEGGDVDNRDDQINRLIRWMS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 134 .59 RPM |
SRP017611_kidney | 0 .00 RPM | 304 .39 RPM |
SRP017611_liver | 0 .00 RPM | 183 .42 RPM |